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Gene transcription is a critical step in gene expression. The currently accepted physical model of transcription predicts the existence of a physical limit on the maximal rate of transcription, which does not depend on the transcribed gene.…

Biological Physics · Physics 2017-01-24 Alexander S. Serov , Alexander J. Levine , Madhav Mani

We introduce a high-throughput platform that enables simultaneous, parallel testing of six bistable beams via programmable motion of a rotating disk. By prescribing harmonic angular dynamics, the platform explores the phase space of angular…

Soft Condensed Matter · Physics 2025-12-11 Eduardo Gutierrez-Prieto , Gilad Yakir , Pedro M. Reis

We provide evidence for the existence of non-trivial unitary conformal boundary conditions for a three-dimensional free scalar field, which can be obtained via a coupling to the m'th unitary diagonal minimal model. For large m we can…

High Energy Physics - Theory · Physics 2022-03-24 Connor Behan , Lorenzo Di Pietro , Edoardo Lauria , Balt C. van Rees

We propose a new model describing the production and the establishment of the stable gradient of the Bicoid protein along the antero-posterior axis of the embryo of \textit{Drosophila}. In this model, we consider that \textit{bicoid} mRNA…

Quantitative Methods · Quantitative Biology 2009-09-24 Rui Dilão , Daniele Muraro

The most general bound binary black hole (BBH) system has an eccentric orbit and precessing spins. The detection of such a system with significant eccentricity close to the merger would be a clear signature of dynamical formation. In order…

General Relativity and Quantum Cosmology · Physics 2025-12-12 Khun Sang Phukon , Nathan K. Johnson-McDaniel , Amitesh Singh , Anuradha Gupta

We introduce the notion of higher Berry connection and curvature in the space of conformal boundary conditions in (1+1)d conformal field theories (CFT), related to each other by exactly marginal boundary deformations, forming a "boundary…

High Energy Physics - Theory · Physics 2025-07-18 Yichul Choi , Hyunsoo Ha , Dongyeob Kim , Yuya Kusuki , Shuhei Ohyama , Shinsei Ryu

In addition to natural selection, adaptive evolution requires genetic variation to proceed. Yet the G-matrix may have limited 'genetic degrees of freedom', with certain combinations of trait values unavailable to evolution. Such limitations…

Populations and Evolution · Quantitative Biology 2013-01-22 Ian Dworkin , David Tack , Jarrod Hadfield

An outstanding issue in braneworld theory concerns the setting up of proper boundary conditions for the brane-bulk system. Boundary conditions (BC's) employing regulatory branes or demanding that the bulk metric be nonsingular have yet to…

Astrophysics · Physics 2008-11-26 Yuri Shtanov , Alexander Viznyuk , Varun Sahni

Gene expression levels are important molecular quantitative traits that link genotypes to molecular functions and fitness. In Drosophila, population-genetic studies in recent years have revealed substantial adaptive evolution at the genomic…

Populations and Evolution · Quantitative Biology 2015-04-06 Armita Nourmohammad , Joachim Rambeau , Torsten Held , Johannes Berg , Michael Lassig

Stochasticity in gene expression gives rise to fluctuations in protein levels across a population of genetically identical cells. Such fluctuations can lead to phenotypic variation in clonal populations, hence there is considerable interest…

Molecular Networks · Quantitative Biology 2015-06-15 Hodjat Pendar , Thierry Platini , Rahul V. Kulkarni

The X chromosome is present as a single copy in the heterogametic sex, and this hemizygosity is expected to drive unusual patterns of evolution on the X relative to the autosomes. For example, the hemizgosity of the X may lead to a lower…

Populations and Evolution · Quantitative Biology 2015-03-20 Melek A. Kayserili , Dave T. Gerrard , Pavel Tomancak , Alex T. Kalinka

The focus of this article is studying an optimal control problem for branching diffusion processes. Initially, we introduce the problem in its strong formulation and expand it to include linearly growing drifts. Then, we present a relaxed…

Probability · Mathematics 2026-01-21 Antonio Ocello

In probabilistic structural mechanics, the Hasofer-Lind reliability index problem is a paradigmatic equality constrained problem of searching for the minimum distance from a point to a surface. In practical engineering problems, such…

Neural and Evolutionary Computing · Computer Science 2023-05-17 Gonçalo das Neves Carneiro , Carlos Conceição António

The body plan of the fruit fly is determined by the expression of just a handful of genes. We show that the spatial patterns of expression for several of these genes scale precisely with the size of the embryo. Concretely, discrete…

Using previous results from boundary conformal field theory and integrability, a phase diagram is derived for the 2 dimensional Ising model at its bulk tri-critical point as a function of boundary magnetic field and boundary spin-coupling…

Statistical Mechanics · Physics 2008-11-26 Ian Affleck

Shedding light onto how biological systems represent, process and store information in noisy environments is a key and challenging goal. A stimulating, though controversial, hypothesis poses that operating in dynamical regimes near the edge…

Disordered Systems and Neural Networks · Physics 2021-07-14 Guillermo B. Morales , Miguel A. Muñoz

Outer boundary conditions for strongly and symmetric hyperbolic formulations of 3D Einstein's field equations with a live gauge condition are discussed. The boundary conditions have the property that they ensure constraint propagation and…

General Relativity and Quantum Cosmology · Physics 2007-05-23 Olivier Sarbach , Manuel Tiglio

We consider the problem of optimizing hybrid structures (mixture of discrete and continuous input variables) via expensive black-box function evaluations. This problem arises in many real-world applications. For example, in materials design…

Machine Learning · Computer Science 2021-12-03 Aryan Deshwal , Syrine Belakaria , Janardhan Rao Doppa

Grain boundary (GB) migration plays a crucial role in the thermal and mechanical responses of polycrystalline materials, particularly in ultrafine-grained and nano-grained materials exhibiting grain size-dependent properties. This study…

Materials Science · Physics 2024-04-08 Liang Yang , Xinyuan Song , Tingting Yu , Dahai Liu , Chuang Deng

Critical systems are described by conformal field theories, whose dynamics can be exactly solved in two dimensions. In the presence of a boundary, with the so-called method of images it is possible to study the surface critical behaviour of…

High Energy Physics - Theory · Physics 2007-05-23 Valentina Riva
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