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Region proposal is critical for object detection while it usually poses a bottleneck in improving the computation efficiency on traditional control-flow architectures. We have observed region proposal tasks are potentially suitable for…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-30 Wenzhi Fu , Jianlei Yang , Pengcheng Dai , Yiran Chen , Weisheng Zhao

As large language models (LLMs) scale up, accuracy improves, but the autoregressive (AR) nature of decoding increases latency since each token requires a serial forward pass. Speculative decoding addresses this by employing a fast drafter…

Computation and Language · Computer Science 2025-10-06 Guanghao Li , Zhihui Fu , Min Fang , Qibin Zhao , Ming Tang , Chun Yuan , Jun Wang

RNA sequencing techniques, like bulk RNA-seq and Single Cell (sc) RNA-seq, are critical tools for the biologist looking to analyze the genetic activity/transcriptome of a tissue or cell during an experimental procedure. Platforms like…

Genomics · Quantitative Biology 2024-07-08 Devam Mondal , Atharva Inamdar

Speculative decoding (SD) accelerates large language model inference by allowing a lightweight draft model to propose outputs that a stronger target model verifies. However, its token-centric nature allows erroneous steps to propagate.…

Computation and Language · Computer Science 2026-04-17 Kiran Purohit , Ramasuri Narayanam , Soumyabrata Pal

Technologies for sequencing (reading) and synthesizing (writing) DNA have progressed on a Moore's law-like trajectory over the last three decades. This has motivated the idea of using DNA for data storage. Theoretically, DNA-based storage…

Emerging Technologies · Computer Science 2023-07-07 Ajay Manicka , Andrew Stephan , Sriram Chari , Gemma Mendonsa , Peyton Okubo , John Stolzberg-Schray , Anil Reddy , Marc Riedel

Gaussian stochastic process (GaSP) has been widely used as a prior over functions due to its flexibility and tractability in modeling. However, the computational cost in evaluating the likelihood is $O(n^3)$, where $n$ is the number of…

Methodology · Statistics 2025-02-13 Mengyang Gu , Yanxun Xu

It is a challenging task to train large DNN models on sophisticated GPU platforms with diversified interconnect capabilities. Recently, pipelined training has been proposed as an effective approach for improving device utilization. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-03 Shiqing Fan , Yi Rong , Chen Meng , Zongyan Cao , Siyu Wang , Zhen Zheng , Chuan Wu , Guoping Long , Jun Yang , Lixue Xia , Lansong Diao , Xiaoyong Liu , Wei Lin

MapReduce is a popular programming paradigm for developing large-scale, data-intensive computation. Many frameworks that implement this paradigm have recently been developed. To leverage these frameworks, however, developers must become…

Databases · Computer Science 2018-06-20 Maaz Bin Safeer Ahmad , Alvin Cheung

We propose a method to exponentially speed up computation of various fingerprints, such as the ones used to compute similarity and rarity in massive data sets. Rather then maintaining the full stream of $b$ items of a universe $[u]$, such…

Data Structures and Algorithms · Computer Science 2010-09-30 Yoram Bachrach , Ely Porat

Evaluation beyond aggregate performance metrics, e.g. F1-score, is crucial to both establish an appropriate level of trust in machine learning models and identify future model improvements. In this paper we demonstrate CrossCheck, an…

Human-Computer Interaction · Computer Science 2020-04-20 Dustin Arendt , Zhuanyi Huang , Prasha Shrestha , Ellyn Ayton , Maria Glenski , Svitlana Volkova

The determinantal point process (DPP) is an elegant probabilistic model of repulsion with applications in various machine learning tasks including summarization and search. However, the maximum a posteriori (MAP) inference for DPP which…

Information Retrieval · Computer Science 2018-05-29 Laming Chen , Guoxin Zhang , Hanning Zhou

In large-scale software systems, there are often no fully-fledged bug reports with human-written descriptions when an error occurs. In this case, developers rely on stack traces, i.e., series of function calls that led to the error. Since…

Software Engineering · Computer Science 2024-12-20 Egor Shibaev , Denis Sushentsev , Yaroslav Golubev , Aleksandr Khvorov

Data cubes are widely used as a powerful tool to provide multidimensional views in data warehousing and On-Line Analytical Processing (OLAP). However, with increasing data sizes, it is becoming computationally expensive to perform data cube…

Databases · Computer Science 2013-11-25 Zhengkui Wang , Yan Chu , Kian-Lee Tan , Divyakant Agrawal , Amr EI Abbadi , Xiaolong Xu

Security-Constrained Unit Commitment is a fundamental optimization problem in power systems operations. The primary computational bottleneck arises from the need to solve large-scale Linear Programming (LP) relaxations within…

Optimization and Control · Mathematics 2025-10-14 Jinxin Xiong , Yanting Huang , Yingxiao Wang , Linxin Yang , Jianghua Wu , Shunbo Lei , Akang Wang

Medication recommendation is an essential task of AI for healthcare. Existing works focused on recommending drug combinations for patients with complex health conditions solely based on their electronic health records. Thus, they have the…

Machine Learning · Computer Science 2022-07-20 Chaoqi Yang , Cao Xiao , Fenglong Ma , Lucas Glass , Jimeng Sun

Molecular docking is a key computational tool utilized to predict the binding conformations of small molecules to protein targets, which is fundamental in the design of novel drugs. Despite recent advancements in geometric deep…

Biomolecules · Quantitative Biology 2023-12-01 Jiaxian Yan , Zaixi Zhang , Kai Zhang , Qi Liu

Pipeline parallelism is a crucial paradigm for large-scale model training. However, imbalances in memory footprint across stages can lead to significant GPU memory wastage, limiting the model sizes that pipeline parallelism can effectively…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-12 Xuan Peng , Xuanhua Shi , Haolin Zhang , Yunfei Zhao , Xuehai Qian

Instruction-level error injection analyses aim to find instructions where errors often lead to unacceptable outcomes like Silent Data Corruptions (SDCs). These analyses require significant time, which is especially problematic if developers…

Software Engineering · Computer Science 2024-03-27 Keyur Joshi , Rahul Singh , Tommaso Bassetto , Sarita Adve , Darko Marinov , Sasa Misailovic

Mixtures of experts have become an indispensable tool for flexible modelling in a supervised learning context, allowing not only the mean function but the entire density of the output to change with the inputs. Sparse Gaussian processes…

Machine Learning · Computer Science 2024-01-23 Clement Etienam , Kody Law , Sara Wade , Vitaly Zankin

Deep neural networks (DNNs) have achieved great success in the area of computer vision. The disparity estimation problem tends to be addressed by DNNs which achieve much better prediction accuracy than traditional hand-crafted feature-based…

Computer Vision and Pattern Recognition · Computer Science 2021-10-07 Qiang Wang , Shaohuai Shi , Shizhen Zheng , Kaiyong Zhao , Xiaowen Chu