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Artificial intelligence offers powerful new tools for scientific discovery, but the interaction paradigms required to effectively harness these systems remain underexplored. In this paper, we present findings from a formative user study…

Artificial Intelligence · Computer Science 2026-05-08 Alex Bäuerle , Adam Connors , Alexander Novikov , Adam Zsolt Wagner , Ngân Vũ , Fernanda Viegas , Martin Wattenberg , Lucas Dixon

Ensuring the reproducibility of scientific work is crucial as it allows the consistent verification of scientific claims and facilitates the advancement of knowledge by providing a reliable foundation for future research. However,…

Software Engineering · Computer Science 2025-04-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

Large language models (LLMs) are increasingly used to automate data analysis through executable code generation. Yet, data science tasks often admit multiple statistically valid solutions, e.g. different modeling strategies, making it…

Machine Learning · Computer Science 2025-11-10 Qiuhai Zeng , Claire Jin , Xinyue Wang , Yuhan Zheng , Qunhua Li

Saving, or checkpointing, intermediate results during interactive data exploration can potentially boost user productivity. However, existing studies on this topic are limited, as they primarily rely on small-scale experiments with human…

Human-Computer Interaction · Computer Science 2025-04-03 Hanxi Fang , Supawit Chockchowwat , Hari Sundaram , Yongjoo Park

The disconnect between AI-generated molecules with desirable properties and their synthetic feasibility remains a critical bottleneck in computational discovery of drugs and materials. While generative AI has accelerated the proposal of…

Chemical Physics · Physics 2025-11-25 Shuan Chen , Gunwook Nam , Alan Aspuru-Guzik , Yousung Jung

Context: Software development tools should work and behave consistently across different programming languages, so that developers do not have to familiarize themselves with new tooling for new languages. Also, being able to combine…

Programming Languages · Computer Science 2018-03-28 Fabio Niephaus , Tim Felgentreff , Tobias Pape , Robert Hirschfeld , Marcel Taeumel

Motivation: Recent advances in single-cell analysis have introduced new computational challenges. Researchers often need to use multiple analysis tools written in different programming languages while managing version conflicts between…

Genomics · Quantitative Biology 2025-08-12 Ryuichiro Nakato , Luis Augusto Eijy Nagai

Prevalent retrieval-based tool-use pipelines struggle with a dual semantic challenge: their retrievers often employ encoders that fail to capture complex semantics, while the Large Language Model (LLM) itself lacks intrinsic tool knowledge…

Artificial Intelligence · Computer Science 2026-01-30 Bowen Fang , Wen Ye , Yunyue Su , Jinghao Zhang , Qiang Liu , Yesheng Liu , Xin Sun , Shu Wu , Jiabing Yang , Baole Wei , Liang Wang

Iteratively refining and critiquing sketches are crucial steps to developing effective designs. We introduce Scones, a mixed-initiative, machine-learning-driven system that enables users to iteratively author sketches from text…

Human-Computer Interaction · Computer Science 2020-05-19 Forrest Huang , Eldon Schoop , David Ha , John Canny

SNNs are an active research domain towards energy efficient machine intelligence. Compared to conventional ANNs, SNNs use temporal spike data and bio-plausible neuronal activation functions such as Leaky-Integrate Fire/Integrate Fire…

Neural and Evolutionary Computing · Computer Science 2022-10-25 Abhishek Moitra , Abhiroop Bhattacharjee , Runcong Kuang , Gokul Krishnan , Yu Cao , Priyadarshini Panda

Designing synthetically accessible molecules and recommending analogs to unsynthesizable molecules are important problems for accelerating molecular discovery. We reconceptualize both problems using ideas from program synthesis. Drawing…

Biomolecules · Quantitative Biology 2025-03-04 Michael Sun , Alston Lo , Minghao Guo , Jie Chen , Connor Coley , Wojciech Matusik

Computational reproducibility is central to scientific credibility, yet verifying published results at scale remains costly. We develop an AI-assisted workflow for automated full-paper replication -- retrieving materials, reconstructing…

Econometrics · Economics 2026-03-27 Yiqing Xu , Leo Yang Yang

Generative AI (GenAI) has fundamentally changed how knowledge workers, such as software developers, solve tasks and collaborate to build software products. Introducing innovative tools like ChatGPT and Copilot has created new opportunities…

Software Engineering · Computer Science 2024-05-06 Rasmus Ulfsnes , Nils Brede Moe , Viktoria Stray , Marianne Skarpen

Researchers face a persistent barrier when applying computational algorithms with parameter configuration typically demanding programming skills, interfaces differing across environments, and settings rarely persisting between sessions.…

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

Computational notebooks, such as Jupyter notebooks, are interactive computing environments that are ubiquitous among data scientists to perform data wrangling and analytic tasks. To measure the performance of AI pair programmers that…

While often assumed a gold standard, effective human evaluation of text generation remains an important, open area for research. We revisit this problem with a focus on producing consistent evaluations that are reproducible -- over time and…

Computation and Language · Computer Science 2022-11-02 Daniel Khashabi , Gabriel Stanovsky , Jonathan Bragg , Nicholas Lourie , Jungo Kasai , Yejin Choi , Noah A. Smith , Daniel S. Weld

Large language models (LLMs) have shown impressive promise in code generation, yet their progress remains limited by the shortage of large-scale datasets that are both diverse and well-aligned with human reasoning. Most existing resources…

Machine Learning · Computer Science 2025-10-28 Amal Abed , Ivan Lukic , Jörg K. H. Franke , Frank Hutter

More than ninety percent of published Jupyter notebooks do not state dependencies on external packages. This makes them non-executable and thus hinders reproducibility of scientific results. We present SnifferDog, an approach that 1)…

Software Engineering · Computer Science 2021-03-05 Jiawei Wang , Li Li , Andreas Zeller

In the ever-evolving landscape of Artificial Intelligence (AI), the synergy between generative AI and Software Engineering emerges as a transformative frontier. This whitepaper delves into the unexplored realm, elucidating how generative AI…

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