Related papers: PLS-completeness of string permutations
How hard is it to find a local optimum? If we are given a graph and want to find a locally maximal cut--meaning that the number of edges in the cut can't be improved by moving a single vertex from one side to the other--then just iterating…
The class PLS (Polynomial Local Search) captures the complexity of finding a solution that is locally optimal and has proven to be an important concept in the theory of local search. It has been shown that local search versions of various…
An infinite permutation is a linear ordering of the set of non-negative integers. Generally, the properties of infinite permutations analogous to those of infinite words show some resemblances and some differences between permutations and…
A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show…
We relate the computational complexity of finite strings to universal representations of their underlying symmetries. First, Boolean functions are classified using the universal covering topologies of the circuits which enumerate them. A…
In this paper, we define the reoptimization variant of the closest substring problem (CSP) under sequence addition. We show that, even with the additional information we have about the problem instance, the problem of finding a closest…
In this note we show that pattern matching in permutations is polynomial time reducible to pattern matching in set partitions. In particular, pattern matching in set partitions is NP-Complete.
The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…
In this paper we show that the following problem is NP-complete: Given an alphabet $\Sigma$ and two strings over $\Sigma$, the question is whether there exists a permutation of $\Sigma$ which is a subsequence of both of the given strings.
A superstring of a set of strings correspond to a string which contains all the other strings as substrings. The problem of finding the Shortest Linear Superstring is a well-know and well-studied problem in stringology. We present here a…
In this paper, we study the complexity of computing locally optimal solutions for weighted versions of standard set problems such as SetCover, SetPacking, and many more. For our investigation, we use the framework of PLS, as defined in…
Given a countable set X (usually taken to be N or Z), an infinite permutation $\pi$ of X is a linear ordering $<_\pi$ of X. This paper investigates the combinatorial complexity of infinite permutations on N associated with the image of…
We consider a wireless network with a set of transmitter-receiver pairs, or links, that share a common channel, and address the problem of emptying finite traffic volume from the transmitters in minimum time. This, so called, minimum-time…
An infinite permutation is a linear ordering of the set of natural numbers. An infinite permutation can be defined by a sequence of real numbers where only the order of elements is taken into account. In the paper we investigate a new class…
Given a countable set X (usually taken to be the natural numbers or integers), an infinite permutation, \pi, of X is a linear ordering of X. This paper investigates the combinatorial complexity of infinite permutations on the natural…
An infinite permutation is a linear order on the set N. We study the properties of infinite permutations generated by fixed points of some uniform binary morphisms, and find the formula for their complexity.
Bit-flip mutation is a common mutation operator for evolutionary algorithms applied to optimize functions over binary strings. In this paper, we develop results from the theory of landscapes and Krawtchouk polynomials to exactly compute the…
In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…
We prove that deciding whether a given input word contains as subsequence every possible permutation of integers $\{1,2,\ldots,n\}$ is coNP-complete. The coNP-completeness holds even when given the guarantee that the input word contains as…
This study investigates whether reoptimization can help in solving the closest substring problem. We are dealing with the following reoptimization scenario. Suppose, we have an optimal l-length closest substring of a given set of sequences…