Related papers: PLS-completeness of string permutations

A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…

Considering matrices with missing entries, we study NP-hard matrix completion problems where the resulting completed matrix shall have limited (local) radius. In the pure radius version, this means that the goal is to fill in the entries…

We present a new algorithm for iterating over all permutations of a sequence. The algorithm leverages elementary~$O(1)$ operations on recursive lists. As a result, no new nodes are allocated during the computation. Instead, all elements are…

We consider the following problem: Given a set S of at most n elements from a universe of size m, represent it in memory as a bit string so that membership queries of the form "Is x in S?" can be answered by making at most t probes into the…

In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…

In this paper we describe a class of codes called {\it permutation codes}. This class of codes is a generalization of cyclic codes and quasi-cyclic codes. We also give some examples of optimal permutation codes over binary, ternary, and…

We show that many infinite classes of permutations over finite fields can be constructed via translators with a large choice of parameters. We first charac- terize some functions having linear translators, based on which several families of…

Recent works put much effort into tensor network structure search (TN-SS), aiming to select suitable tensor network (TN) structures, involving the TN-ranks, formats, and so on, for the decomposition or learning tasks. In this paper, we…

We examine the open problem of finding the shortest string that contains each of the n! permutations of n symbols as contiguous substrings (i.e., the shortest superpermutation on n symbols). It has been conjectured that the shortest…

Given a countable set X (usually taken to be the natural numbers or the integers), an infinite permutation \pi of X is a linear ordering of X. This paper investigates the combinatorial complexity of the infinite permutation on the natural…

In the classical longest palindromic substring (LPS) problem, we are given a string $S$ of length $n$, and the task is to output a longest palindromic substring in $S$. Gilbert, Hajiaghayi, Saleh, and Seddighin [SPAA 2023] showed how to…

We investigate the space complexity of certain perfect matching problems over bipartite graphs embedded on surfaces of constant genus (orientable or non-orientable). We show that the problems of deciding whether such graphs have (1) a…

The problem of storing permutations in a distributed manner arises in several common scenarios, such as efficient updates of a large, encrypted, or compressed data set. This problem may be addressed in either a combinatorial or a coding…

We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…

String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are given a set of strings of equal length and a radius $d$. The…

In this paper, we propose a new indexing structure for parameterized strings which we call PLSTs, by generalizing linear-size suffix tries for ordinary strings. Two parameterized strings are said to match if there is a bijection on the…

Computing string or sequence alignments is a classical method of comparing strings and has applications in many areas of computing, such as signal processing and bioinformatics. Semi-local string alignment is a recent generalisation of this…

We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…

We consider the problem of finding a local optimum for Max-Cut with FLIP-neighborhood, in which exactly one node changes the partition. Schaeffer and Yannakakis (SICOMP, 1991) showed PLS-completeness of this problem on graphs with unbounded…

Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…