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Accurate identification of protein nucleic-acid-binding residues poses a significant challenge with important implications for various biological processes and drug design. Many typical computational methods for protein analysis rely on a…

Biomolecules · Quantitative Biology 2023-12-21 Linglin Jing , Sheng Xu , Yifan Wang , Yuzhe Zhou , Tao Shen , Zhigang Ji , Hui Fang , Zhen Li , Siqi Sun

Most recent approaches to monocular 3D human pose estimation rely on Deep Learning. They typically involve regressing from an image to either 3D joint coordinates directly or 2D joint locations from which 3D coordinates are inferred. Both…

Computer Vision and Pattern Recognition · Computer Science 2017-04-11 Bugra Tekin , Pablo Márquez-Neila , Mathieu Salzmann , Pascal Fua

Providing effective, personalized support is critical for helping students overcome conceptual difficulties in physics. However, established scaffolding methods, such as structured tiered support, are often too resource-intensive for…

Physics Education · Physics 2025-08-11 E. Becker , J. Wünsche , J. M. Veith , J. Schrader , P. Bitzenbauer

Virtual screening performance depends heavily on the chosen docking and scoring methods. Recent AI-based tools such as DiffDock and NMDN have reported strong benchmark results, but their practical utility on realistic,…

Machine Learning · Computer Science 2026-05-06 Youssef Abo-Dahab , Xiaoiang Xiang , Joanne Chun , Liang Zhao

Advances in deep learning have opened an era of abundant and accurate predicted protein structures; however, similar progress in protein ensembles has remained elusive. This review highlights several recent research directions towards…

Biomolecules · Quantitative Biology 2025-09-23 Bowen Jing , Bonnie Berger , Tommi Jaakkola

Computational protein structure determination involves optimization in a problem space much too large to exhaustively search. Existing approaches include optimization algorithms such as gradient descent and simulated annealing, but these…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-04 Michael Bryson , Xijiang Miao , Homayoun Valafar

Physics-Informed Neural Networks (PINNs) provide a powerful and general framework for solving Partial Differential Equations (PDEs) by embedding physical laws into loss functions. However, training PINNs is notoriously difficult due to the…

Machine Learning · Computer Science 2025-10-09 Kang An , Chenhao Si , Ming Yan , Shiqian Ma

Deformable Object Manipulation (DOM) is of significant importance to both daily and industrial applications. Recent successes in differentiable physics simulators allow learning algorithms to train a policy with analytic gradients through…

Robotics · Computer Science 2023-03-13 Siwei Chen , Yiqing Xu , Cunjun Yu , Linfeng Li , Xiao Ma , Zhongwen Xu , David Hsu

Recent advances in diffusion models have significantly improved conditional video generation, particularly in the pose-guided human image animation task. Although existing methods are capable of generating high-fidelity and time-consistent…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Shuolin Xu , Siming Zheng , Ziyi Wang , HC Yu , Jinwei Chen , Huaqi Zhang , Daquan Zhou , Tong-Yee Lee , Bo Li , Peng-Tao Jiang

Light-activated drugs are a promising way to localize biological activity and minimize side effects. However, their development is complicated by the numerous photophysical and biological properties that must be simultaneously optimized. To…

Chemical Physics · Physics 2023-02-23 Simon Axelrod , Eugene Shakhnovich , Rafael Gómez-Bombarelli

Recently, transformer-based methods have gained significant success in sequential 2D-to-3D lifting human pose estimation. As a pioneering work, PoseFormer captures spatial relations of human joints in each video frame and human dynamics…

Computer Vision and Pattern Recognition · Computer Science 2023-03-31 Qitao Zhao , Ce Zheng , Mengyuan Liu , Pichao Wang , Chen Chen

The potential of learned models for fundamental scientific research and discovery is drawing increasing attention worldwide. Physics-informed neural networks (PINNs), where the loss function directly embeds governing equations of scientific…

Neural and Evolutionary Computing · Computer Science 2023-12-07 Nicholas Sung Wei Yong , Jian Cheng Wong , Pao-Hsiung Chiu , Abhishek Gupta , Chinchun Ooi , Yew-Soon Ong

This paper makes two scientific contributions to the field of exoskeleton-based action and movement recognition. First, it presents a novel machine learning and pattern recognition-based framework that can detect a wide range of actions and…

Robotics · Computer Science 2022-04-28 Nirmalya Thakur , Chia Y. Han

2D-to-3D human pose lifting is an ill-posed problem due to depth ambiguity and occlusion. Existing methods relying on spatial and temporal consistency alone are insufficient to resolve these problems especially in the presence of…

Computer Vision and Pattern Recognition · Computer Science 2025-11-13 Longyun Liao , Rong Zheng

Deep learning has transformed protein design, enabling accurate structure prediction, sequence optimization, and de novo protein generation. Advances in single-chain protein structure prediction via AlphaFold2, RoseTTAFold, ESMFold, and…

Machine Learning · Computer Science 2025-02-27 Gregory W. Kyro , Tianyin Qiu , Victor S. Batista

The protein design problem involves finding polypeptide sequences folding into a given threedimensional structure. Its rigorous algorithmic solution is computationally demanding, involving a nested search in sequence and structure spaces.…

Quantum Physics · Physics 2024-07-11 Veronica Panizza , Philipp Hauke , Cristian Micheletti , Pietro Faccioli

Human parsing and pose estimation have recently received considerable interest due to their substantial application potentials. However, the existing datasets have limited numbers of images and annotations and lack a variety of human…

Computer Vision and Pattern Recognition · Computer Science 2018-04-09 Xiaodan Liang , Ke Gong , Xiaohui Shen , Liang Lin

3D human pose estimation using monocular images is an important yet challenging task. Existing 3D pose detection methods exhibit excellent performance under normal conditions however their performance may degrade due to occlusion. Recently…

Computer Vision and Pattern Recognition · Computer Science 2022-03-09 Mehwish Ghafoor , Arif Mahmood

Physical reasoning is a crucial aspect in the development of general AI systems, given that human learning starts with interacting with the physical world before progressing to more complex concepts. Although researchers have studied and…

Artificial Intelligence · Computer Science 2023-12-19 Andrew Melnik , Robin Schiewer , Moritz Lange , Andrei Muresanu , Mozhgan Saeidi , Animesh Garg , Helge Ritter

In this work, we propose a deep learning approach to improve docking-based virtual screening. The introduced deep neural network, DeepVS, uses the output of a docking program and learns how to extract relevant features from basic data such…

Quantitative Methods · Quantitative Biology 2016-11-22 Janaina Cruz Pereira , Ernesto Raul Caffarena , Cicero dos Santos
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