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Graph Neural Networks (GNNs) often struggle with heterophilic data, where connected nodes may have dissimilar labels, as they typically assume homophily and rely on local message passing. To address this, we propose creating alternative…

Machine Learning · Computer Science 2025-06-11 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Convolutional neural networks (CNNs) have achieved great success on grid-like data such as images, but face tremendous challenges in learning from more generic data such as graphs. In CNNs, the trainable local filters enable the automatic…

Machine Learning · Computer Science 2018-09-05 Hongyang Gao , Zhengyang Wang , Shuiwang Ji

Large Language Models (LLMs) have shown remarkable capabilities in processing various data structures, including graphs. While previous research has focused on developing textual encoding methods for graph representation, the emergence of…

Machine Learning · Computer Science 2024-09-16 Zhiqiang Zhong , Davide Mottin

We investigate the representation power of graph neural networks in the semi-supervised node classification task under heterophily or low homophily, i.e., in networks where connected nodes may have different class labels and dissimilar…

Machine Learning · Computer Science 2020-10-26 Jiong Zhu , Yujun Yan , Lingxiao Zhao , Mark Heimann , Leman Akoglu , Danai Koutra

Length generalization, the ability to generalize from small training context sizes to larger ones, is a critical challenge in the development of Transformer-based language models. Positional encoding (PE) has been identified as a major…

Computation and Language · Computer Science 2023-11-08 Amirhossein Kazemnejad , Inkit Padhi , Karthikeyan Natesan Ramamurthy , Payel Das , Siva Reddy

Many real-world graphs involve different types of nodes and relations between nodes, being heterogeneous by nature. The representation learning of heterogeneous graphs (HGs) embeds the rich structure and semantics of such graphs into a…

Machine Learning · Computer Science 2021-09-16 Costas Mavromatis , George Karypis

Most existing graph neural networks (GNNs) learn node embeddings using the framework of message passing and aggregation. Such GNNs are incapable of learning relative positions between graph nodes within a graph. To empower GNNs with the…

Machine Learning · Computer Science 2024-11-05 Zhenyue Qin , Yiqun Zhang Saeed Anwar , Dongwoo Kim , Yang Liu , Pan Ji , Tom Gedeon

Learning meaningful graphs from data plays important roles in many data mining and machine learning tasks, such as data representation and analysis, dimension reduction, data clustering, and visualization, etc. In this work, for the first…

Machine Learning · Computer Science 2020-07-30 Yongyu Wang , Zhiqiang Zhao , Zhuo Feng

In this study, we investigate the impact of positional encoding (PE) on source separation performance and the generalization ability to long sequences (length extrapolation) in Transformer-based time-frequency (TF) domain dual-path models.…

Audio and Speech Processing · Electrical Eng. & Systems 2025-06-03 Kohei Saijo , Tetsuji Ogawa

Hierarchical multi-label classification (HMLC) is essential for modeling structured label dependencies in remote sensing. Yet existing approaches struggle in multi-path settings, where images may activate multiple taxonomic branches,…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Boshko Koloski , Marjan Stoimchev , Jurica Levatić , Dragi Kocev , Sašo Džeroski

Hypergraphs provide a natural framework for modeling higher-order interactions, yet their theoretical underpinnings in semi-supervised learning remain limited. We provide an asymptotic consistency analysis of variational learning on random…

Machine Learning · Computer Science 2025-11-25 Adrien Weihs , Andrea L. Bertozzi , Matthew Thorpe

We present a framework for learning Node Embeddings from Static Subgraphs (NESS) using a graph autoencoder (GAE) in a transductive setting. NESS is based on two key ideas: i) Partitioning the training graph to multiple static, sparse…

Machine Learning · Computer Science 2023-05-24 Talip Ucar

Recent advancements in large-scale pre-training have shown the potential to learn generalizable representations for downstream tasks. In the graph domain, however, capturing and transferring structural information across different graph…

Machine Learning · Computer Science 2026-02-24 Jialin Chen , Haolan Zuo , Haoyu Peter Wang , Siqi Miao , Pan Li , Rex Ying

Learning embeddings from large-scale networks is an open challenge. Despite the overwhelming number of existing methods, is is unclear how to exploit network structure in a way that generalizes easily to unseen nodes, edges or graphs. In…

Machine Learning · Computer Science 2020-09-29 Nurudin Alvarez-Gonzalez , Andreas Kaltenbrunner , Vicenç Gómez

Heterogeneous graphs are widely present in real-world complex networks, where the diversity of node and relation types leads to complex and rich semantics. Efforts for modeling complex relation semantics in heterogeneous graphs are…

Computation and Language · Computer Science 2025-11-25 Wenda Li , Tongya Zheng , Shunyu Liu , Yu Wang , Kaixuan Chen , Hanyang Yuan , Bingde Hu , Zujie Ren , Mingli Song , Gang Chen

Convolution Neural Networks on Graphs are important generalization and extension of classical CNNs. While previous works generally assumed that the graph structures of samples are regular with unified dimensions, in many applications, they…

Machine Learning · Computer Science 2017-08-17 Ruoyu Li , Junzhou Huang

Heterogeneous Graph Neural Networks(HGNNs) have advanced mainly through better encoders, yet their decoding/projection stage still relies on a single shared linear head, assuming it can map rich node embeddings to labels. We call this the…

Machine Learning · Computer Science 2026-01-12 Wei Zhou , Hong Huang , Ruize Shi , Bang Liu

Graph Neural Networks (GNNs) excel in handling graph-structured data but often underperform in link prediction tasks compared to classical methods, mainly due to the limitations of the commonly used message-passing principle. Notably, their…

Machine Learning · Computer Science 2025-02-18 Niloofar Azizi , Nils Kriege , Horst Bischof

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

Machine Learning · Computer Science 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

The performance of many network learning applications crucially hinges on the success of network embedding algorithms, which aim to encode rich network information into low-dimensional vertex-based vector representations. This paper…

Machine Learning · Computer Science 2019-10-01 Wenlin Wang , Chenyang Tao , Zhe Gan , Guoyin Wang , Liqun Chen , Xinyuan Zhang , Ruiyi Zhang , Qian Yang , Ricardo Henao , Lawrence Carin