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There are several reasons why the fear of vaccination has caused population rejection. Questions have been raised by students regarding the effectiveness of vaccines, which in turn has led to vaccination hesitancy. Students perceptions are…

Computers and Society · Computer Science 2021-12-03 Ashraf Elnagar , Imad Afyouni , Ismail Shahin , Ali Bou Nassif , Said A. Salloum

The phase III BNT162b2 mRNA COVID-19 vaccine trial is based on a Bayesian design and analysis, and the main evidence of vaccine efficacy is presented in Bayesian statistics. Confusion and mistakes are produced in the presentation of the…

Applications · Statistics 2021-03-10 Yuan Ji , Shijie Yuan

Background: Target trial emulation (TTE) that applies trial design principles to improve the analysis of non-randomized studies is increasingly being used. Applications of TTE to emulate cluster randomized trials (RCTs) have been limited.…

Applications · Statistics 2025-12-17 Shomoita Alam , Nathaniel Dyrkton , Susan Shepherd , Ibrahim Sana , Kevin Phelan , Jay JH Park

Testing for infection with SARS-CoV-2 is an important intervention in reducing onwards transmission of COVID-19, particularly when combined with the isolation and contact-tracing of positive cases. Many countries with the capacity to do so…

Populations and Evolution · Quantitative Biology 2022-07-19 Miguel E. P. Silva , Martyn Fyles , Li Pi , Jasmina Panovska-Griffiths , Caroline Jay , Thomas House , Elizabeth Fearon

The coronavirus disease 2019 (COVID-19) pandemic has spread rapidly across the world, leading to enormous amounts of human death and economic loss. Until definitive preventive or curative measures are developed, policies regarding testing,…

Strategic test allocation plays a major role in the control of both emerging and existing pandemics (e.g., COVID-19, HIV). Widespread testing supports effective epidemic control by (1) reducing transmission via identifying cases, and (2)…

Methodology · Statistics 2022-12-06 Ivana Malenica , Jeremy R. Coyle , Mark J. van der Laan , Maya L. Petersen

The world has witnessed unprecedented human and economic loss from the COVID-19 disease, caused by the novel coronavirus SARS-CoV-2. Extensive research is being conducted across the globe to identify therapeutic agents against the…

Biomolecules · Quantitative Biology 2020-04-09 Rohit Batra , Henry Chan , Ganesh Kamath , Rampi Ramprasad , Mathew J. Cherukara , Subramanian Sankaranarayanan

This paper develops an agent-based disease spread model on a contact network in an effort to guide efforts at surveillance testing in small to moderate facilities such as nursing homes and meat-packing plants. The model employs Monte Carlo…

Populations and Evolution · Quantitative Biology 2021-10-04 Yanyue Ding , Sudesh K. Agrawal , Jincheng Cao , Lauren Meyers , John J. Hasenbein

Deep neural networks (DNNs) are now the de facto choice for computer vision tasks such as image classification. However, their complexity and "black box" nature often renders the systems they're deployed in vulnerable to a range of security…

Cryptography and Security · Computer Science 2021-10-19 Chandramouli Amarnath , Aishwarya H. Balwani , Kwondo Ma , Abhijit Chatterjee

To mitigate the pandemic stemming from COVID-19, numerous nations have initiated extensive vaccination campaigns for their citizens since late 2020. While affluent countries have predominantly received vaccine allocations, fewer doses have…

Physics and Society · Physics 2024-04-01 Hsin-Ju Chou , Jing-Yuan Ko , Sung-Po Chao

Contact tracing has been extensively studied from different perspectives in recent years. However, there is no clear indication of why this intervention has proven effective in some epidemics (SARS) and mostly ineffective in some others…

Social and Information Networks · Computer Science 2021-03-01 Quyu Kong , Manuel Garcia-Herranz , Ivan Dotu , Manuel Cebrian

Genetic association studies have been a popular approach for assessing the association between common Single Nucleotide Polymorphisms (SNPs) and complex diseases. However, other genomic data involved in the mechanism from SNPs to disease,…

Applications · Statistics 2014-04-28 Yen-Tsung Huang , Tyler J. VanderWeele , Xihong Lin

In epidemic or pandemic situations, resources for testing the infection status of individuals may be scarce. Although group testing can help to significantly increase testing capabilities, the (repeated) testing of entire populations can…

Populations and Evolution · Quantitative Biology 2021-10-29 Günther Koliander , Georg Pichler

Testing is an important part of tackling the COVID-19 pandemic. Availability of testing is a bottleneck due to constrained resources and effective prioritization of individuals is necessary. Here, we discuss the impact of different…

Machine Learning · Computer Science 2020-07-30 Hagit Grushka-Cohen , Raphael Cohen , Bracha Shapira , Jacob Moran-Gilad , Lior Rokach

Recent work has focused on nonparametric estimation of conditional treatment effects, but inference has remained relatively unexplored. We propose a class of nonparametric tests for both quantitative and qualitative treatment effect…

Methodology · Statistics 2026-04-07 Oliver Dukes , Mats J. Stensrud , Riccardo Brioschi , Aaron Hudson

A theory of neural networks (NNs) built upon collective variables would provide scientists with the tools to better understand the learning process at every stage. In this work, we introduce two such variables, the entropy and the trace of…

Machine Learning · Computer Science 2023-05-03 Samuel Tovey , Sven Krippendorf , Konstantin Nikolaou , Christian Holm

Diagnostic test accuracy studies observe the result of a gold standard procedure that defines the presence or absence of a disease and the result of a diagnostic test. They typically report the number of true positives, false positives,…

Methodology · Statistics 2020-08-19 Aristidis K. Nikoloulopoulos

The Ebola epidemic in West Africa is the largest ever recorded, with over 27,000 cases and 11,000 deaths as of June 2015. The public health response was challenged by difficulties with disease surveillance, which impacted subsequent…

Populations and Evolution · Quantitative Biology 2015-08-07 Marisa C. Eisenberg , Joseph N. S. Eisenberg , Jeremy P. D'Silva , Eden V. Wells , Sarah Cherng , Yu-Han Kao , Rafael Meza

We introduce topological differential testing (TDT), an approach to extracting the consensus behavior of a set of programs on a corpus of inputs. TDT uses the topological notion of a simplicial complex (and implicitly draws on richer…

Software Engineering · Computer Science 2020-03-06 Kristopher Ambrose , Steve Huntsman , Michael Robinson , Matvey Yutin

We propose a new method that uses tensor completion to estimate causal effects with multivariate longitudinal data, data in which multiple outcomes are observed for each unit and time period. Our motivation is to estimate the number of…

Methodology · Statistics 2023-11-21 Jonathan Auerbach , Martin Slawski , Shixue Zhang