Related papers: Morphisms and BWT-run Sensitivity
Detecting vulnerabilities within compiled binaries is challenging due to lost high-level code structures and other factors such as architectural dependencies, compilers, and optimization options. To address these obstacles, this research…
Advances in DNA sequencing technology have stimulated the development of algorithms and tools for processing very large collections of short strings (reads). Short-read alignment and assembly are among the most well-studied problems. Many…
We present a new scalable, lightweight algorithm to incrementally construct the BWT and FM-index of large string sets such as those produced by Next Generation Sequencing. The algorithm is designed for massive parallelism and can…
A wavelet forest for a text $T [1..n]$ over an alphabet $\sigma$ takes $n H_0 (T) + o (n \log \sigma)$ bits of space and supports access and rank on $T$ in $O (\log \sigma)$ time. K\"arkk\"ainen and Puglisi (2011) implicitly introduced…
Bitmap indexes must be compressed to reduce input/output costs and minimize CPU usage. To accelerate logical operations (AND, OR, XOR) over bitmaps, we use techniques based on run-length encoding (RLE), such as Word-Aligned Hybrid (WAH)…
Given a countable set X (usually taken to be the natural numbers or integers), an infinite permutation, \pi, of X is a linear ordering of X. This paper investigates the combinatorial complexity of infinite permutations on the natural…
Unitary matrix integrals over symmetric polynomials play an important role in a wide variety of applications, including random matrix theory, gauge theory, number theory, and enumerative combinatorics. We derive novel results on such…
The problem we consider is the following: Given an infinite word $w$ on an ordered alphabet, construct the sequence $\nu_w=(\nu[n])_n$, equidistributed on $[0,1]$ and such that $\nu[m]<\nu[n]$ if and only if $\sigma^m(w)<\sigma^n(w)$, where…
Given a countable set X (usually taken to be N or Z), an infinite permutation $\pi$ of X is a linear ordering $<_\pi$ of X. This paper investigates the combinatorial complexity of infinite permutations on N associated with the image of…
The traditional approach to morphological inflection (the task of modifying a base word (lemma) to express grammatical categories) has been, for decades, to consider lexical entries of lemma-tag-form triples uniformly, lacking any…
We investigate the integration of human-like working memory constraints into the Transformer architecture and implement several cognitively inspired attention variants, including fixed-width windows based and temporal decay based attention…
Some recent results have introduced external-memory algorithms to compute self-indexes of a set of strings, mainly via computing the Burrows-Wheeler Transform (BWT) of the input strings. The motivations for those results stem from…
Understanding intricate and fast-paced movements of body parts is essential for the recognition and translation of sign language. The inclusion of additional information intended to identify and locate the moving body parts has been an…
Binarization, which converts weight parameters to binary values, has emerged as an effective strategy to reduce the size of large language models (LLMs). However, typical binarization techniques significantly diminish linguistic…
Ordering the collection of states of a given automaton starting from an order of the underlying alphabet is a natural move towards a computational treatment of the language accepted by the automaton. Along this path, Wheeler \emph{graphs}…
Two words are $k$-binomially equivalent whenever they share the same subwords, i.e., subsequences, of length at most $k$ with the same multiplicities. This is a refinement of both abelian equivalence and the Simon congruence. The…
A word over an ordered alphabet is said to be clustering if identical letters appear adjacently in its Burrows-Wheeler transform. Such words are strictly related to (discrete) interval exchange transformations. We use an extended version of…
The Bag-of-Words (BoW) representation is well applied to recent state-of-the-art image retrieval works. Typically, multiple vocabularies are generated to correct quantization artifacts and improve recall. However, this routine is corrupted…
Evolutionary robotics offers a powerful framework for designing and evolving robot morphologies, particularly in the context of modular robots. However, the role of query mechanisms during the genotype-to-phenotype mapping process has been…
Enumerating the number of times one word occurs in another is a much-studied combinatorial subject. By utilizing a method that we call ``lexicographic extreme referencing'', we provide a formula for computing occurrences of one binary word…