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Related papers: Morphisms and BWT-run Sensitivity

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We present a novel metric for the evaluation of the morphological plausibility of subword segmentation. Unlike the typically used morpheme boundary or retrieval F-score, which requires gold segmentation data that is either unavailable or of…

Computation and Language · Computer Science 2026-01-27 Abishek Stephen , Jindřich Libovický

In this paper, we show that the LZ77 factorization of a text T {\in\Sigma^n} can be computed in O(R log n) bits of working space and O(n log R) time, R being the number of runs in the Burrows-Wheeler transform of T reversed. For extremely…

Data Structures and Algorithms · Computer Science 2015-10-22 Nicola Prezza , Alberto Policriti

When building Burrows-Wheeler Transforms (BWTs) of truly huge datasets, prefix-free parsing (PFP) can use an unreasonable amount of memory. In this paper we show how if a dataset can be broken down into small datasets that are not very…

Data Structures and Algorithms · Computer Science 2025-06-09 Diego Diaz-Dominguez , Travis Gagie , Veronica Guerrini , Ben Langmead , Zsuzsanna Liptak , Giovanni Manzini , Francesco Masillo , Vikram Shivakumar

A weight based dynamic compression method has recently been proposed, which is especially suitable for the encoding of files with locally skewed distributions. Its main idea is to assign larger weights to closer to be encoded symbols by…

Data Structures and Algorithms · Computer Science 2021-05-24 Aharon Fruchtman , Yoav Gross , Shmuel T. Klein , Dana Shapira

Sublinear time quantum algorithms have been established for many fundamental problems on strings. This work demonstrates that new, faster quantum algorithms can be designed when the string is highly compressible. We focus on two popular and…

Data Structures and Algorithms · Computer Science 2023-02-15 Daniel Gibney , Sharma V. Thankachan

Let $A_q$ be a $q$-letter alphabet and $w$ be a right infinite word on this alphabet. A subword of $w$ is a block of consecutive letters of $w$. The subword complexity function of $w$ assigns to each positive integer $n$ the number $f_w(n)$…

Combinatorics · Mathematics 2007-05-23 Irina Gheorghiciuc

The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations…

Data Structures and Algorithms · Computer Science 2016-09-22 Djamal Belazzougui , Fabio Cunial , Juha Kärkkäinen , Veli Mäkinen

Do word embeddings converge to learn similar things over different initializations? How repeatable are experiments with word embeddings? Are all word embedding techniques equally reliable? In this paper we propose evaluating methods for…

Computation and Language · Computer Science 2016-05-13 Yingtao Tian , Vivek Kulkarni , Bryan Perozzi , Steven Skiena

As multimodal learning finds applications in a wide variety of high-stakes societal tasks, investigating their robustness becomes important. Existing work has focused on understanding the robustness of vision-and-language models to…

Machine Learning · Computer Science 2022-11-07 Gaurav Verma , Vishwa Vinay , Ryan A. Rossi , Srijan Kumar

Recent studies on compression of pretrained language models (e.g., BERT) usually use preserved accuracy as the metric for evaluation. In this paper, we propose two new metrics, label loyalty and probability loyalty that measure how closely…

Computation and Language · Computer Science 2021-10-05 Canwen Xu , Wangchunshu Zhou , Tao Ge , Ke Xu , Julian McAuley , Furu Wei

We show that the Longest Common Prefix Array of a text collection of total size n on alphabet [1, {\sigma}] can be computed from the Burrows-Wheeler transformed collection in O(n log {\sigma}) time using o(n log {\sigma}) bits of working…

Data Structures and Algorithms · Computer Science 2019-01-23 Nicola Prezza , Giovanna Rosone

This paper proposes a novel binarized weight network (BT) for a resource-efficient neural structure. The proposed model estimates a binary representation of weights by taking into account the approximation error with an additional term.…

Computer Vision and Pattern Recognition · Computer Science 2021-05-11 Savas Ozkan , Gozde Bozdagi Akar

We describe a grammar for DNA sequencing reads from which we can compute the BWT directly. Our motivation is to perform in succinct space genomic analyses that require complex string queries not yet supported by repetition-based…

Data Structures and Algorithms · Computer Science 2020-11-17 Diego Díaz-Domínguez , Gonzalo Navarro

In combinatorics on words, the well-studied factor complexity function $\rho_{\infw{x}}$ of a sequence $\infw{x}$ over a finite alphabet counts, for every nonnegative integer $n$, the number of distinct length-$n$ factors of $\infw{x}$. In…

Combinatorics · Mathematics 2025-05-07 Jean-Paul Allouche , John M. Campbell , Shuo Li , Jeffrey Shallit , Manon Stipulanti

Motivated by challenges in pangenomic read alignment, we propose a generalization of Wheeler graphs that we call Wheeler maps. A Wheeler map stores a text $T[1..n]$ and an assignment of tags to the characters of $T$ such that we can…

Data Structures and Algorithms · Computer Science 2023-08-22 Andrej Baláz , Travis Gagie , Adrián Goga , Simon Heumos , Gonzalo Navarro , Alessia Petescia , Jouni Sirén

We apply the influence-adaptive Walsh geometry of a companion theory paper (arXiv:2605.01637) to extreme low-bit weight-only LLM quantization. The recipe is one math-invariant transformation: WHT-rotate each linear layer's weight matrix and…

Machine Learning · Computer Science 2026-05-26 Gorgi Pavlov

Inertial measurement unit-based online handwriting recognition enables the recognition of input signals collected across different writing surfaces but remains challenged by uneven character distributions and inter-writer variability. In…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Jindong Li , Dario Zanca , Vincent Christlein , Tim Hamann , Jens Barth , Peter Kämpf , Björn Eskofier

The positional Burrows-Wheeler Transform (PBWT) is commonly used to store haplotype panels compactly in such a way that, given a query haplotype, we can quickly find the set maximal exact matches (SMEMs) between the query and the haplotypes…

Data Structures and Algorithms · Computer Science 2026-05-26 Travis Gagie

This study investigates the impact of morphological typology on tokenization and language modeling performance. We focus on languages with synthetic and analytical morphological structures and examine their productivity when tokenized using…

Computation and Language · Computer Science 2024-11-01 Iñigo Parra

Previous compact representations of permutations have focused on adding a small index on top of the plain data $<\pi(1), \pi(2),...\pi(n)>$, in order to efficiently support the application of the inverse or the iterated permutation. In this…

Data Structures and Algorithms · Computer Science 2011-08-23 Jérémy Barbay , Gonzalo Navarro
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