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Sequence discovery tools play a central role in several fields of computational biology. In the framework of Transcription Factor binding studies, motif finding algorithms of increasingly high performance are required to process the big…

Quantitative Methods · Quantitative Biology 2014-08-27 Nicolò Colombo , Nikos Vlassis

This work presents a framework for studying temporal networks using zigzag persistence, a tool from the field of Topological Data Analysis (TDA). The resulting approach is general and applicable to a wide variety of time-varying graphs. For…

Computational Geometry · Computer Science 2023-08-15 Audun Myers , David Muñoz , Firas Khasawneh , Elizabeth Munch

Networks are widely used to model real-world systems and uncover their topological features. Network properties such as the degree distribution and shortest path length have been computed in numerous real-world networks, and most of them…

Social and Information Networks · Computer Science 2017-07-17 David Aparício , Pedro Ribeiro , Fernando Silva

Identifying communities from temporal networks facilitates the understanding of potential dynamic relationships among entities, which has already received extensive applications. However, existing methods primarily rely on lower-order…

Social and Information Networks · Computer Science 2024-10-22 Huihui Yang , Chunxue Zhu , Longlong Lin , Pingpeng Yuan

Graph-based change point detection (CPD) play an irreplaceable role in discovering anomalous graphs in the time-varying network. While several techniques have been proposed to detect change points by identifying whether there is a…

Social and Information Networks · Computer Science 2022-12-20 Yongshun Gong , Xue Dong , Jian Zhang , Meng Chen

Tree of Thoughts (ToT) enhances Large Language Model (LLM) reasoning by structuring problem-solving as a spanning tree. However, recent methods focus on search accuracy while overlooking computational efficiency. The challenges of…

Artificial Intelligence · Computer Science 2025-02-28 Yifu Ding , Wentao Jiang , Shunyu Liu , Yongcheng Jing , Jinyang Guo , Yingjie Wang , Jing Zhang , Zengmao Wang , Ziwei Liu , Bo Du , Xianglong Liu , Dacheng Tao

While self-supervised graph pretraining techniques have shown promising results in various domains, their application still experiences challenges of limited topology learning, human knowledge dependency, and incompetent multi-level…

Machine Learning · Computer Science 2023-12-20 Pengwei Yan , Kaisong Song , Zhuoren Jiang , Yangyang Kang , Tianqianjin Lin , Changlong Sun , Xiaozhong Liu

Temporal motif mining is the task of finding the occurrences of subgraph patterns within a large input temporal graph that obey the specified structural and temporal constraints. Despite its utility in several critical application domains…

Software Engineering · Computer Science 2023-10-12 Yichao Yuan , Haojie Ye , Sanketh Vedula , Wynn Kaza , Nishil Talati

Very large time series are increasingly available from an ever wider range of IoT-enabled sensors deployed in different environments. Significant insights can be gained by mining temporal patterns from these time series. Unlike traditional…

Databases · Computer Science 2021-11-18 Van Long Ho , Nguyen Ho , Torben Bach Pedersen

Temporal Point Processes (TPPs) have recently become increasingly interesting for learning dynamics in graph data. A reason for this is that learning on dynamic graph data is becoming more relevant, since data from many scientific fields,…

Machine Learning · Computer Science 2024-08-29 Alice Moallemy-Oureh , Silvia Beddar-Wiesing , Yannick Nagel , Rüdiger Nather , Josephine M. Thomas

With the proliferation of temporal graph data, there is a growing demand for analyzing information propagation patterns during graph evolution. Existing graph analysis systems, mostly based on static snapshots, struggle to effectively…

Databases · Computer Science 2025-12-30 Jiacheng Ding , Cong Guo , Xiaofei Zhang

Computing a (short) path between two vertices is one of the most fundamental primitives in graph algorithmics. In recent years, the study of paths in temporal graphs, that is, graphs where the vertex set is fixed but the edge set changes…

Discrete Mathematics · Computer Science 2021-05-27 Arnaud Casteigts , Anne-Sophie Himmel , Hendrik Molter , Philipp Zschoche

Time series of graphs are increasingly prevalent in modern data and pose unique challenges to visual exploration and pattern extraction. This paper describes the development and application of matrix factorizations for exploration and…

Social and Information Networks · Computer Science 2015-06-16 Shawn Mankad , George Michailidis

Graph motif, defined as the microstructure that appears repeatedly in a large graph, reveals important topological characteristics of the large graph and has gained increasing attention in power system analysis regarding reliability,…

Systems and Control · Electrical Eng. & Systems 2024-12-10 Yiyan Li , Zhenghao Zhou , Jian Ping , Xiaoyuan Xu , Zheng Yan , Jianzhong Wu

Dynamic networks, a.k.a. graph streams, consist of a set of vertices and a collection of timestamped interaction events (i.e., temporal edges) between vertices. Temporal motifs are defined as classes of (small) isomorphic induced subgraphs…

Methodology · Statistics 2022-02-23 Xiaojing Zhu , Eric D. Kolaczyk

Skeleton-based gait emotion recognition has received significant attention due to its wide-ranging applications. However, existing methods primarily focus on extracting spatial and local temporal motion information, failing to capture…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Junjie Zhou , Haijun Xiong , Junhao Lu , Ziyu Lin , Bin Feng

Well-designed open-source software drives progress in Machine Learning (ML) research. While static graph ML enjoys mature frameworks like PyTorch Geometric and DGL, ML for temporal graphs (TG), networks that evolve over time, lacks…

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to…

Social and Information Networks · Computer Science 2018-01-08 Ashwin Paranjape , Austin R. Benson , Jure Leskovec

Temporal Graph Learning (TGL) has become a robust framework for discovering patterns in dynamic networks and predicting future interactions. While existing research has largely concentrated on learning from individual networks, this study…

Dynamic evolving networks capture temporal relations in domains such as social networks, communication networks, and financial transaction networks. In such networks, temporal motifs, which are repeated sequences of time-stamped…

Social and Information Networks · Computer Science 2022-01-03 Alexandra Porter , Baharan Mirzasoleiman , Jure Leskovec