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Topological deep learning has emerged as a powerful paradigm for modeling higher-order relational structures beyond pairwise interactions that standard graph neural networks fail to capture. While combinatorial complexes (CCs) offer a…

Machine Learning · Computer Science 2026-03-16 Jiawen Chen , Qi Shao , Mingtong Zhou , Duxin Chen , Wenwu Yu

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

Computational Geometry · Computer Science 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

Despite the vast literature on network dynamics, we still lack basic insights into dynamics on higher-order structures (e.g., edges, triangles, and more generally, $k$-dimensional "simplices") and how they are influenced through…

Physics and Society · Physics 2022-03-14 Cameron Ziegler , Per Sebastian Skardal , Haimonti Dutta , Dane Taylor

As data structures and mathematical objects used for complex systems modeling, hypergraphs sit nicely poised between on the one hand the world of network models, and on the other that of higher-order mathematical abstractions from algebra,…

Multiplex networks describe systems whose interactions can be of different nature, and are fundamental to understand complexity of networks beyond the framework of simple graphs. Recently it has been pointed out that restricting the…

Physics and Society · Physics 2022-11-14 Reza Ghorbanchian , Vito Latora , Ginestra Bianconi

Multi-cell cooperation (MCC) mitigates intercell interference and improves throughput at the cell edge. This paper considers a cooperative downlink, whereby cell-edge mobiles are served by multiple cooperative base stations. The cooperating…

Information Theory · Computer Science 2016-11-17 Salvatore Talarico , Matthew C. Valenti , Don Torrieri

We investigate the influence of topology on the magnetic response of inductively coupled superconducting flux-qubit networks. Using exact diagonalization methods and linear response theory, we compare the magnetic response of linear and…

Quantum Physics · Physics 2025-10-13 J. Settino , G. G. Luciano , A. Di Bartolomeo , P. Silvestrini , M. Lisitskiy , B. Ruggiero , F. Romeo

Coupled map lattices (CMLs) are prototypical dynamical systems on networks/graphs. They exhibit complex patterns generated via the interplay of diffusive/Laplacian coupling and nonlinear reactions modelled by a single iterated map at each…

Chaotic Dynamics · Physics 2021-09-24 Tobias Böhle , Christian Kuehn , Raffaella Mulas , Jürgen Jost

Multilayer networks provide a more advanced and comprehensive framework for modeling real-world systems compared to traditional single-layer and multiplex networks. Unlike single-layer models, multilayer networks have multiple interacting…

Optimization and Control · Mathematics 2025-02-26 Christian D. Rodríguez-Camargo , Andrés F. Urquijo-Rodríguez , Eduardo Mojica-Nava

Developing methods to process irregularly structured data is crucial in applications like gene-regulatory, brain, power, and socioeconomic networks. Graphs have been the go-to algebraic tool for modeling the structure via nodes and edges…

Signal Processing · Electrical Eng. & Systems 2025-02-17 Elvin Isufi , Geert Leus , Baltasar Beferull-Lozano , Sergio Barbarossa , Paolo Di Lorenzo

The aim of this paper is to introduce a novel dictionary learning algorithm for sparse representation of signals defined over combinatorial topological spaces, specifically, regular cell complexes. Leveraging Hodge theory, we embed topology…

Signal Processing · Electrical Eng. & Systems 2025-03-17 Enrico Grimaldi , Claudio Battiloro , Paolo Di Lorenzo

We propose a novel computational framework leveraging hypergraph theory to analyse cancer stem cell markers (CSCMs) across multiple organs. Hypergraphs provide a robust representation of CSCM co-expression patterns, capturing their complex…

Biological Physics · Physics 2025-08-01 David H. Margarit , Gustavo Paccosi , Marcela V. Reale , Lilia M. Romanelli

Topological Signal Processing (TSP) over simplicial complexes is a framework that has been recently proposed, as a generalization of graph signal processing (GSP), to extend GSP to analyzing signals defined over sets of any order (i.e., not…

Signal Processing · Electrical Eng. & Systems 2023-10-10 Stefania Sardellitti , Sergio Barbarossa

Multiplex networks are complex graph structures in which a set of entities are connected to each other via multiple types of relations, each relation representing a distinct layer. Such graphs are used to investigate many complex…

This paper introduces a topological framework for interpreting the internal representations of Multilayer Perceptrons (MLPs). We construct a simplicial tower, a sequence of simplicial complexes connected by simplicial maps, that captures…

Machine Learning · Computer Science 2025-06-03 Eduardo Paluzo-Hidalgo

Artificial intelligence (AI) is reshaping computational and network biology by enabling new approaches to decode cellular communication networks. We introduce Hierarchical Molecular Language Models (HMLMs), a novel framework that models…

Molecular Networks · Quantitative Biology 2025-12-16 Hasi Hays , Yue Yu , William J. Richardson

We present a novel and hierarchical approach for supervised classification of signals spanning over a fixed graph, reflecting shared properties of the dataset. To this end, we introduce a Convolutional Cluster Pooling layer exploiting a…

Machine Learning · Computer Science 2019-02-14 Angelo Porrello , Davide Abati , Simone Calderara , Rita Cucchiara

Multilayer graphs encode different kind of interactions between the same set of entities. When one wants to cluster such a multilayer graph, the natural question arises how one should merge the information different layers. We introduce in…

Machine Learning · Statistics 2018-03-02 Pedro Mercado , Antoine Gautier , Francesco Tudisco , Matthias Hein

The design and engineering of molecular communication (MC) components capable of processing chemical concentration signals is the key to unleashing the potential of MC for interdisciplinary applications. By controlling the signaling pathway…

Information Theory · Computer Science 2023-10-19 Rinrada Jadsadaphongphaibool , Dadi Bi , Yansha Deng

Real-world complex systems exhibit multiple levels of relationships. In many cases, they require to be modeled by interconnected multilayer networks, characterizing interactions on several levels simultaneously. It is of crucial importance…

Physics and Society · Physics 2015-04-24 Manlio De Domenico , Albert Solé-Ribalta , Elisa Omodei , Sergio Gómez , Alex Arenas