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Large language models (LLMs) have demonstrated capabilities across diverse domains, yet their performance on rare disease diagnosis from narrative medical cases remains underexplored. We introduce a novel dataset of 176 symptom-diagnosis…

Computation and Language · Computer Science 2025-11-17 Arsh Gupta , Ajay Narayanan Sridhar , Bonam Mingole , Amulya Yadav

The rapid growth of biomedical knowledge has outpaced our ability to efficiently extract insights and generate novel hypotheses. Large language models (LLMs) have emerged as a promising tool to revolutionize knowledge interaction and…

Computation and Language · Computer Science 2024-07-16 Biqing Qi , Kaiyan Zhang , Kai Tian , Haoxiang Li , Zhang-Ren Chen , Sihang Zeng , Ermo Hua , Hu Jinfang , Bowen Zhou

Large language models (LLMs) and emerging agentic frameworks are beginning to transform single-cell biology by enabling natural-language reasoning, generative annotation, and multimodal data integration. However, progress remains fragmented…

Computation and Language · Computer Science 2025-11-25 Sajib Acharjee Dip , Adrika Zafor , Bikash Kumar Paul , Uddip Acharjee Shuvo , Muhit Islam Emon , Xuan Wang , Liqing Zhang

Large language model (LLM) agents face fundamental limitations in long-horizon reasoning due to finite context windows, making effective memory management critical. Existing methods typically handle long-term memory (LTM) and short-term…

Computation and Language · Computer Science 2026-05-01 Yi Yu , Liuyi Yao , Yuexiang Xie , Qingquan Tan , Jiaqi Feng , Yaliang Li , Libing Wu

Software issue resolution aims to address real-world issues in software repositories (e.g., bug fixing and efficiency optimization) based on natural language descriptions provided by users, representing a key aspect of software maintenance.…

Software Engineering · Computer Science 2025-12-30 Zhonghao Jiang , David Lo , Zhongxin Liu

Large Language Models (LLMs) and LLM-based agents show great promise in accelerating scientific research. Existing benchmarks for measuring this potential and guiding future development continue to evolve from pure recall and rote knowledge…

The potential of Large Language Model (LLM) as agents has been widely acknowledged recently. Thus, there is an urgent need to quantitatively \textit{evaluate LLMs as agents} on challenging tasks in interactive environments. We present…

Large Language Models (LLMs) like GPT-4 have revolutionized natural language processing, showing remarkable linguistic proficiency and reasoning capabilities. However, their application in strategic multi-agent decision-making environments…

Computation and Language · Computer Science 2024-05-29 Chuanhao Li , Runhan Yang , Tiankai Li , Milad Bafarassat , Kourosh Sharifi , Dirk Bergemann , Zhuoran Yang

With recent advancements in natural language processing, Large Language Models (LLMs) have emerged as powerful tools for various real-world applications. Despite their prowess, the intrinsic generative abilities of LLMs may prove…

Artificial Intelligence · Computer Science 2025-12-30 Jingqing Ruan , Yihong Chen , Bin Zhang , Zhiwei Xu , Tianpeng Bao , Guoqing Du , Shiwei Shi , Hangyu Mao , Ziyue Li , Xingyu Zeng , Rui Zhao

Corpus distillation for biomedical large language models (LLMs) seeks to address the pressing challenge of insufficient quantity and quality in open-source annotated scientific corpora, which remains a bottleneck for effective LLM training…

Computation and Language · Computer Science 2025-12-19 Meng Xiao , Xunxin Cai , Qingqing Long , Chengrui Wang , Yuanchun Zhou , Hengshu Zhu

The emergence of large language model (LLM)-based agents has significantly advanced the development of autonomous machine learning (ML) engineering. However, the dominant prompt-based paradigm exhibits limitations: smaller models lack the…

Computation and Language · Computer Science 2026-05-04 Zexi Liu , Jingyi Chai , Xinyu Zhu , Shuo Tang , Rui Ye , Bo Zhang , Lei Bai , Siheng Chen

Large Language Models (LLMs) have made remarkable advancements in the field of natural language processing. However, their increasing size poses challenges in terms of computational cost. On the other hand, Small Language Models (SLMs) are…

Computation and Language · Computer Science 2023-08-03 Zhen Guo , Peiqi Wang , Yanwei Wang , Shangdi Yu

The increasing volume of drug combinations in modern therapeutic regimens needs reliable methods for predicting drug-drug interactions (DDIs). While Large Language Models (LLMs) have revolutionized various domains, their potential in…

Machine Learning · Computer Science 2025-02-12 Gabriele De Vito , Filomena Ferrucci , Athanasios Angelakis

With the recent emergence of revolutionary autonomous agentic systems, research community is witnessing a significant shift from traditional static, passive, and domain-specific AI agents toward more dynamic, proactive, and generalizable…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Huanjin Yao , Ruifei Zhang , Jiaxing Huang , Jingyi Zhang , Yibo Wang , Bo Fang , Ruolin Zhu , Yongcheng Jing , Shunyu Liu , Guanbin Li , Dacheng Tao

Large Language Models (LLMs) have grown exponentially since the release of ChatGPT. These models have gained attention due to their robust performance on various tasks, including language processing tasks. These models achieve understanding…

Computation and Language · Computer Science 2025-08-11 Ali Sarabadani , Maryam Abdollahi Shamami , Hamidreza Sadeghsalehi , Borhan Asadi , Saba Hesaraki

Effective decision-making in complex systems requires synthesizing diverse perspectives to address multifaceted challenges under uncertainty. This study introduces an agentic Large Language Models (LLMs) framework for simulating decision…

Artificial Intelligence · Computer Science 2026-03-20 Antoine Dolant , Praveen Kumar

The pursuit of human-level artificial intelligence (AI) has significantly advanced the development of autonomous agents and Large Language Models (LLMs). LLMs are now widely utilized as decision-making agents for their ability to interpret…

In practice, clinicians achieve a diagnosis by following a sequence of steps, such as laboratory exams, observations, or imaging. The pathways to reach diagnosis decisions are documented by guidelines authored by expert organizations, which…

Computation and Language · Computer Science 2024-09-25 Elisa Castagnari , Lillian Muyama , Adrien Coulet

This work introduces Gemma, a family of lightweight, state-of-the art open models built from the research and technology used to create Gemini models. Gemma models demonstrate strong performance across academic benchmarks for language…

Computation and Language · Computer Science 2024-04-17 Gemma Team , Thomas Mesnard , Cassidy Hardin , Robert Dadashi , Surya Bhupatiraju , Shreya Pathak , Laurent Sifre , Morgane Rivière , Mihir Sanjay Kale , Juliette Love , Pouya Tafti , Léonard Hussenot , Pier Giuseppe Sessa , Aakanksha Chowdhery , Adam Roberts , Aditya Barua , Alex Botev , Alex Castro-Ros , Ambrose Slone , Amélie Héliou , Andrea Tacchetti , Anna Bulanova , Antonia Paterson , Beth Tsai , Bobak Shahriari , Charline Le Lan , Christopher A. Choquette-Choo , Clément Crepy , Daniel Cer , Daphne Ippolito , David Reid , Elena Buchatskaya , Eric Ni , Eric Noland , Geng Yan , George Tucker , George-Christian Muraru , Grigory Rozhdestvenskiy , Henryk Michalewski , Ian Tenney , Ivan Grishchenko , Jacob Austin , James Keeling , Jane Labanowski , Jean-Baptiste Lespiau , Jeff Stanway , Jenny Brennan , Jeremy Chen , Johan Ferret , Justin Chiu , Justin Mao-Jones , Katherine Lee , Kathy Yu , Katie Millican , Lars Lowe Sjoesund , Lisa Lee , Lucas Dixon , Machel Reid , Maciej Mikuła , Mateo Wirth , Michael Sharman , Nikolai Chinaev , Nithum Thain , Olivier Bachem , Oscar Chang , Oscar Wahltinez , Paige Bailey , Paul Michel , Petko Yotov , Rahma Chaabouni , Ramona Comanescu , Reena Jana , Rohan Anil , Ross McIlroy , Ruibo Liu , Ryan Mullins , Samuel L Smith , Sebastian Borgeaud , Sertan Girgin , Sholto Douglas , Shree Pandya , Siamak Shakeri , Soham De , Ted Klimenko , Tom Hennigan , Vlad Feinberg , Wojciech Stokowiec , Yu-hui Chen , Zafarali Ahmed , Zhitao Gong , Tris Warkentin , Ludovic Peran , Minh Giang , Clément Farabet , Oriol Vinyals , Jeff Dean , Koray Kavukcuoglu , Demis Hassabis , Zoubin Ghahramani , Douglas Eck , Joelle Barral , Fernando Pereira , Eli Collins , Armand Joulin , Noah Fiedel , Evan Senter , Alek Andreev , Kathleen Kenealy

Advancements in large language models (LLMs) allow them to address diverse questions using human-like interfaces. Still, limitations in their training prevent them from answering accurately in scenarios that could benefit from multiple…

Artificial Intelligence · Computer Science 2025-04-09 Yoshitaka Inoue , Tianci Song , Xinling Wang , Augustin Luna , Tianfan Fu