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Prediction of protein-ligand complexes for flexible proteins remains still a challenging problem in computational structural biology and drug design. Here we present two novel deep neural network approaches with significant improvement in…

Biomolecules · Quantitative Biology 2020-08-28 Amr H. Mahmoud , Jonas F. Lill , Markus A. Lill

The dynamics of two-dimensional fluids confined within a random matrix of obstacles is investigated using both colloidal model experiments and molecular dynamics simulations. By varying fluid and matrix area fractions in the experiment, we…

In this study, we employ Graph Neural Networks (GNNs) to accelerate the discovery of novel 2D magnetic materials which have transformative potential in spintronics applications. Using data from the Materials Project database and the…

Disordered Systems and Neural Networks · Physics 2024-02-06 Ahmed Elrashidy , James Della-Giustina , Jia-An Yan

Graph neural networks (GNNs) have drawn more and more attention from material scientists and demonstrated a high capacity to establish connections between the structure and properties. However, with only unrelaxed structures provided as…

Materials Science · Physics 2022-09-16 Chen Liang , Bowen Wang , Shaogang Hao , Guangyong Chen , Pheng-Ann Heng , Xiaolong Zou

Prediction of the stable crystal structure for multinary (ternary or higher) compounds with unexplored compositions demands fast and accurate evaluation of free energies in exploring the vast configurational space. The machine-learning…

Computational Physics · Physics 2021-01-04 Changho Hong , Jeong Min Choi , Wonseok Jeong , Sungwoo Kang , Suyeon Ju , Kyeongpung Lee , Jisu Jung , Yong Youn , Seungwu Han

Graph Neural Networks are perfectly suited to capture latent interactions between various entities in the spatio-temporal domain (e.g. videos). However, when an explicit structure is not available, it is not obvious what atomic elements…

Computer Vision and Pattern Recognition · Computer Science 2021-12-08 Iulia Duta , Andrei Nicolicioiu , Marius Leordeanu

A cardinal obstacle to understanding and predicting quantitatively the properties of solids and large molecules is that, for these systems, it is very challenging to describe beyond the mean-field level the quantum-mechanical interactions…

Strongly Correlated Electrons · Physics 2020-09-14 Nicola Lanatà

Carbon fiber and graphene-based nanostructures such as carbon nanotubes (CNTs) and defective structures have extraordinary potential as strong and lightweight materials. A longstanding bottleneck has been lack of understanding and…

Materials Science · Physics 2021-10-26 Qi Zhao , Jordan J. Winetrout , Yanxun Xu , Yusu Wang , Hendrik Heinz

We present a locality-aware method for interpreting the latent space of wavelet-based Generative Adversarial Networks (GANs), that can well capture the large spatial and spectral variability that is characteristic to satellite imagery. By…

Computer Vision and Pattern Recognition · Computer Science 2023-09-27 Georgia Kourmouli , Nikos Kostagiolas , Yannis Panagakis , Mihalis A. Nicolaou

Singular graphene metasurfaces, conductivity gratings realized by periodically suppressing the local doping level of a graphene sheet, have recently been proposed to efficiently harvest THz light and couple it to surface plasmons over broad…

Mesoscale and Nanoscale Physics · Physics 2020-02-05 E. Galiffi , P. A. Huidobro , P. A. D. Gonçalves , N. A. Mortensen , J. B. Pendry

In this paper we propose a real-time, calibration-agnostic and effective localization system for self-driving cars. Our method learns to embed the online LiDAR sweeps and intensity map into a joint deep embedding space. Localization is then…

Computer Vision and Pattern Recognition · Computer Science 2020-12-22 Ioan Andrei Bârsan , Shenlong Wang , Andrei Pokrovsky , Raquel Urtasun

Categorical quantum mechanics studies quantum theory in the framework of dagger-compact closed categories. Using this framework, we establish a tight relationship between two key quantum theoretical notions: non-locality and…

Quantum Physics · Physics 2013-06-20 Bob Coecke , Ross Duncan , Aleks Kissinger , Quanlong Wang

Accurate structural analysis is essential to gain physical knowledge and understanding of atomic-scale processes in materials from atomistic simulations. However, traditional analysis methods often reach their limits when applied to…

Active learning enables the efficient construction of a labeled dataset by labeling informative samples from an unlabeled dataset. In a real-world active learning scenario, considering the diversity of the selected samples is crucial…

Machine Learning · Computer Science 2022-07-15 Yeachan Kim , Bonggun Shin

Deep neural networks have achieved remarkable success, yet our understanding of how they learn remains limited. These models can learn high-dimensional tasks, which is generally statistically intractable due to the curse of dimensionality.…

Machine Learning · Computer Science 2025-10-08 Alessandro Favero

Dynamic graphs are prevalent in real-world scenarios, where continuous structural changes induce catastrophic forgetting in graph neural networks (GNNs). While continual learning has been extended to dynamic graphs, existing methods…

Machine Learning · Computer Science 2025-12-15 Tingxu Yan , Ye Yuan

Prediction and control of chemical mixing are vital for many scientific areas such as subsurface reactive transport, climate modeling, combustion, epidemiology, and pharmacology. Due to the complex nature of mixing in heterogeneous and…

Machine Learning · Computer Science 2021-12-15 N. V. Jagtap , M. K. Mudunuru , K. B. Nakshatrala

Simultaneous Localization and Mapping (SLAM) is one of the most essential techniques in many real-world robotic applications. The assumption of static environments is common in most SLAM algorithms, which however, is not the case for most…

Robotics · Computer Science 2022-05-17 Han Wang , Jing Ying Ko , Lihua Xie

This paper studies double/debiased machine learning (DML) methods applied to weakly dependent data. We allow observations to be situated in a general metric space that accommodates spatial and network data. Existing work implements…

Econometrics · Economics 2025-11-17 Jianfei Cao , Michael P. Leung

Our proposed framework attempts to break the trade-off between performance and explainability by introducing an explainable-by-design convolutional neural network (CNN) based on the lateral inhibition mechanism. The ExplaiNet model consists…

Machine Learning · Computer Science 2024-11-04 Pantelis I. Kaplanoglou , Konstantinos Diamantaras