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Related papers: APPA : Agentic Preformulation Pathway Assistant

200 papers

Current Autonomous Scientific Research (ASR) systems, despite leveraging large language models (LLMs) and agentic architectures, remain constrained by fixed workflows and toolsets that prevent adaptation to evolving tasks and environments.…

Artificial Intelligence · Computer Science 2026-04-01 Martin Legrand , Tao Jiang , Matthieu Feraud , Benjamin Navet , Yousouf Taghzouti , Fabien Gandon , Elise Dumont , Louis-Félix Nothias

Factor analysis and principal component analysis (PCA) are used in many application areas. The first step, choosing the number of components, remains a serious challenge. Our work proposes improved methods for this important problem. One of…

Methodology · Statistics 2019-09-17 Edgar Dobriban , Art B. Owen

Decision-making related to health is complex. Machine learning (ML) and patient generated data can identify patterns and insights at the individual level, where human cognition falls short, but not all ML-generated information is of equal…

Applications · Statistics 2021-01-15 Elliot G Mitchell , Esteban G Tabak , Matthew E Levine , Lena Mamykina , David J Albers

Conversational agents (CAs) represent an emerging research field in health information systems, where there are great potentials in empowering patients with timely information and natural language interfaces. Nevertheless, there have been…

Artificial Intelligence · Computer Science 2021-05-21 Thuy-Trinh Nguyen , Kellie Sim , Anthony To Yiu Kuen , Ronald R. O'donnell , Suan Tee Lim , Wenru Wang , Hoang D. Nguyen

Intelligent Personal Assistants (IPAs) are software agents that can perform tasks on behalf of individuals and assist them on many of their daily activities. IPAs capabilities are expanding rapidly due to the recent advances on areas such…

Software Engineering · Computer Science 2019-06-06 Oscar J. Romero

Generative models are increasingly powerful, yet users struggle to guide them through prompts. The generative process is difficult to control and unpredictable, and user instructions may be ambiguous or under-specified. Prior prompt…

Human-Computer Interaction · Computer Science 2026-02-16 Zhipeng Li , Yi-Chi Liao , Christian Holz

Drug target binding affinity (DTA) is a key criterion for drug screening. Existing experimental methods are time-consuming and rely on limited structural and domain information. While learning-based methods can model sequence and structural…

Machine Learning · Computer Science 2024-06-26 Xi Xiao , Wentao Wang , Jiacheng Xie , Lijing Zhu , Gaofei Chen , Zhengji Li , Tianyang Wang , Min Xu

As a necessary process in drug development, finding a drug compound that can selectively bind to a specific protein is highly challenging and costly. Drug-target affinity (DTA), which represents the strength of drug-target interaction…

Biomolecules · Quantitative Biology 2023-12-18 Zhiqin Zhu , Zheng Yao , Guanqiu Qi , Neal Mazur , Baisen Cong

This paper introduces SePA (Search-enhanced Predictive AI Agent), a novel LLM health coaching system that integrates personalized machine learning and retrieval-augmented generation to deliver adaptive, evidence-based guidance. SePA…

Human-Computer Interaction · Computer Science 2025-09-08 Melik Ozolcer , Sang Won Bae

Computational models that accurately predict the binding affinity of an input protein-chemical pair can accelerate drug discovery studies. These models are trained on available protein-chemical interaction datasets, which may contain…

Quantitative Methods · Quantitative Biology 2023-01-10 Rıza Özçelik , Alperen Bağ , Berk Atıl , Melih Barsbey , Arzucan Özgür , Elif Özkırımlı

Multi-modal representation methods have achieved advanced performance in medical applications by extracting more robust features from multi-domain data. However, existing methods usually need to train additional branches for downstream…

Computer Vision and Pattern Recognition · Computer Science 2023-03-16 Weijian Huang , Hao Yang , Cheng Li , Mingtong Dai , Rui Yang , Shanshan Wang

Applying pre-trained models to assist point cloud understanding has recently become a mainstream paradigm in 3D perception. However, existing application strategies are straightforward, utilizing only the final output of the pre-trained…

Computer Vision and Pattern Recognition · Computer Science 2025-05-28 Yaohua Zha , Yanzi Wang , Hang Guo , Jinpeng Wang , Tao Dai , Bin Chen , Zhihao Ouyang , Xue Yuerong , Ke Chen , Shu-Tao Xia

Recent advancements in retrieval-augmented generation (RAG) have enhanced large language models in question answering by integrating external knowledge. However, challenges persist in achieving global understanding and aligning responses…

Computation and Language · Computer Science 2025-06-24 Quanwei Tang , Sophia Yat Mei Lee , Junshuang Wu , Dong Zhang , Shoushan Li , Erik Cambria , Guodong Zhou

Process simulation is a critical cornerstone of chemical engineering design. Current automated chemical design methodologies focus mainly on various representations of process flow diagrams. However, transforming these diagrams into…

Artificial Intelligence · Computer Science 2026-01-13 Xufei Tian , Wenli Du , Shaoyi Yang , Han Hu , Hui Xin , Shifeng Qu , Ke Ye

Large language models (LLMs) integrated with autonomous agents hold significant potential for advancing scientific discovery through automated reasoning and task execution. However, applying LLM agents to drug discovery is still constrained…

Artificial Intelligence · Computer Science 2025-07-29 Kun Li , Zhennan Wu , Shoupeng Wang , Jia Wu , Shirui Pan , Wenbin Hu

Fully automated self-driving laboratories are promising to enable high-throughput and large-scale scientific discovery by reducing repetitive labour. However, effective automation requires deep integration of laboratory knowledge, which is…

Artificial Intelligence · Computer Science 2025-09-30 Shuxiang Cao , Zijian Zhang , Mohammed Alghadeer , Simone D Fasciati , Michele Piscitelli , Mustafa Bakr , Peter Leek , Alán Aspuru-Guzik

This paper introduces a multi-agent application system designed to enhance office collaboration efficiency and work quality. The system integrates artificial intelligence, machine learning, and natural language processing technologies,…

Artificial Intelligence · Computer Science 2025-04-08 Songtao Sun , Jingyi Li , Yuanfei Dong , Haoguang Liu , Chenxin Xu , Fuyang Li , Qiang Liu

One of the most common pitfalls often found in high dimensional biological data sets are correlations between the features. This may lead to statistical and machine learning methodologies overvaluing or undervaluing these correlated…

Machine Learning · Computer Science 2021-11-18 Troy Maaslandand , João Pereira , Diogo Bastos , Marcus de Goffau , Max Nieuwdorp , Aeilko H. Zwinderman , Evgeni Levin

Deep learning bears promise for drug discovery, including advanced image analysis, prediction of molecular structure and function, and automated generation of innovative chemical entities with bespoke properties. Despite the growing number…

Artificial Intelligence · Computer Science 2020-07-03 José Jiménez-Luna , Francesca Grisoni , Gisbert Schneider

The field of mobile agent (MA) technology has been intensively researched during the past few years, resulting in the phenomenal proliferation of available MA platforms, all sharing several common design characteristics. Research projects…

Networking and Internet Architecture · Computer Science 2010-12-22 Damianos Gavalas