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Related papers: Global Least Common Ancestor (LCA) Networks

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Rooted phylogenetic networks, or more generally, directed acyclic graphs (DAGs), are widely used to model species or gene relationships that traditional rooted trees cannot fully capture, especially in the presence of reticulate processes…

Populations and Evolution · Quantitative Biology 2025-01-24 Anna Lindeberg , Marc Hellmuth

We investigate the connections between clusters and least common ancestors (LCAs) in directed acyclic graphs (DAGs). We focus on the class of DAGs having unique least common ancestors for certain subsets of their minimal elements since…

Discrete Mathematics · Computer Science 2023-09-26 Ameera Vaheeda Shanavas , Manoj Changat , Marc Hellmuth , Peter F. Stadler

A least common ancestor (LCA) of two leaves in a directed acyclic graph (DAG) is a vertex that is an ancestor of both leaves and has no proper descendant that is also their common ancestor. LCAs capture hierarchical relationships in rooted…

Combinatorics · Mathematics 2026-05-06 Anna Lindeberg , Anton Alfonsson , Vincent Moulton , Guillaume E. Scholz , Marc Hellmuth

We explore the connections between clusters and least common ancestors (LCAs) in directed acyclic graphs (DAGs), focusing on the interplay between so-called $I$-lca-relevant DAGs and DAGs with the $I$-lca-property. Here, $I$ denotes a set…

Combinatorics · Mathematics 2025-08-12 Marc Hellmuth , Anna Lindeberg

The AP-LCA problem asks, given an $n$-node directed acyclic graph (DAG), to compute for every pair of vertices $u$ and $v$ in the DAG a lowest common ancestor (LCA) of $u$ and $v$ if one exists. In this paper we study several interesting…

Data Structures and Algorithms · Computer Science 2022-04-26 Surya Mathialagan , Virginia Vassilevska Williams , Yinzhan Xu

Phylogenetic networks and, more generally, directed acyclic graphs (DAGs) represent hierarchical structure beyond trees, for instance in the presence of reticulate evolutionary events such as hybridization or horizontal gene transfer. A…

Populations and Evolution · Quantitative Biology 2026-05-22 Marc Hellmuth , Anna Lindeberg , Vincent Moulton

Let $G=(V,E)$ be an $n$-vertex directed acyclic graph (DAG). A lowest common ancestor (LCA) of two vertices $u$ and $v$ is a common ancestor $w$ of $u$ and $v$ such that no descendant of $w$ has the same property. In this paper, we consider…

Data Structures and Algorithms · Computer Science 2020-11-16 Fabrizio Grandoni , Giuseppe F. Italiano , Aleksander Łukasiewicz , Nikos Parotsidis , Przemysław Uznański

An acyclic causal structure can be described with directed acyclic graph (DAG), where arrows indicate the possibility of direct causation. The task of learning this structure from data is known as "causal discovery." Diverse populations or…

Machine Learning · Computer Science 2024-10-17 Bijan Mazaheri , Spencer Gordon , Yuval Rabani , Leonard Schulman

We introduce a novel class of labeled directed acyclic graph (LDAG) models for finite sets of discrete variables. LDAGs generalize earlier proposals for allowing local structures in the conditional probability distribution of a node, such…

Machine Learning · Statistics 2014-11-12 Johan Pensar , Henrik Nyman , Timo Koski , Jukka Corander

Directed Acyclic Graphs (DAGs) are a standard tool in causal modeling, but their suitability for capturing the complexity of large-scale multimodal data is questionable. In practice, real-world multimodal datasets are often collected from…

Machine Learning · Computer Science 2026-03-03 Yuhang Liu , Zhen Zhang , Dong Gong , Erdun Gao , Biwei Huang , Mingming Gong , Anton van den Hengel , Kun Zhang , Javen Qinfeng Shi

In causal graphical models based on directed acyclic graphs (DAGs), directed paths represent causal pathways between the corresponding variables. The variable at the beginning of such a path is referred to as an ancestor of the variable at…

Machine Learning · Computer Science 2021-05-24 Wenyu Chen , Mathias Drton , Ali Shojaie

Directed acyclic graphs (DAGs) are commonly used to model causal relationships among random variables. In general, learning the DAG structure is both computationally and statistically challenging. Moreover, without additional information,…

Machine Learning · Statistics 2024-03-26 Ali Shojaie , Wenyu Chen

A growing body of work has begun to study intervention design for efficient structure learning of causal directed acyclic graphs (DAGs). A typical setting is a causally sufficient setting, i.e. a system with no latent confounders, selection…

Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…

Machine Learning · Computer Science 2025-05-30 Michael Sun , Orion Foo , Gang Liu , Wojciech Matusik , Jie Chen

We develop a novel convolutional architecture tailored for learning from data defined over directed acyclic graphs (DAGs). DAGs can be used to model causal relationships among variables, but their nilpotent adjacency matrices pose unique…

Machine Learning · Computer Science 2024-05-07 Samuel Rey , Hamed Ajorlou , Gonzalo Mateos

It is well known that there may be many causal explanations that are consistent with a given set of data. Recent work has been done to represent the common aspects of these explanations into one representation. In this paper, we address…

Methodology · Statistics 2012-07-09 Ayesha R. Ali , Thomas S. Richardson , Peter L. Spirtes , Jiji Zhang

Learning the structure of dependence relations between variables is a pervasive issue in the statistical literature. A directed acyclic graph (DAG) can represent a set of conditional independences, but different DAGs may encode the same set…

Methodology · Statistics 2021-02-15 Federico Castelletti , Stefano Peluso

A well-studied challenge that arises in the structure learning problem of causal directed acyclic graphs (DAG) is that using observational data, one can only learn the graph up to a "Markov equivalence class" (MEC). The remaining undirected…

Machine Learning · Computer Science 2022-05-20 Vibhor Porwal , Piyush Srivastava , Gaurav Sinha

Learning a faithful directed acyclic graph (DAG) from samples of a joint distribution is a challenging combinatorial problem, owing to the intractable search space superexponential in the number of graph nodes. A recent breakthrough…

Machine Learning · Computer Science 2019-04-24 Yue Yu , Jie Chen , Tian Gao , Mo Yu

Estimating the structure of directed acyclic graphs (DAGs) from observational data remains a significant challenge in machine learning. Most research in this area concentrates on learning a single DAG for the entire population. This paper…

Machine Learning · Statistics 2024-02-21 Ryan Thompson , Edwin V. Bonilla , Robert Kohn
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