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We present PyAtoms, an interactive open-source software that rapidly simulates atomic-scale scanning tunneling microscopy (STM) and other scanning probe microscopy (SPM) images of two-dimensional (2D) layered materials, moir\'{e} systems,…

This work introduces a new framework integrating port-Hamiltonian systems (PHS) and neural network architectures. This framework bridges the gap between deterministic and stochastic modeling of complex dynamical systems. We introduce new…

Mathematical Physics · Physics 2025-09-09 Luca Di Persio , Matthias Ehrhardt , Youness Outaleb , Sofia Rizzotto

We introduce a novel tensor network structure augmenting the well-established Tree Tensor Network representation of a quantum many-body wave function. The new structure satisfies the area law in high dimensions remaining efficiently…

Quantum Physics · Physics 2021-05-05 Timo Felser , Simone Notarnicola , Simone Montangero

Port-Hamiltonian neural networks (pHNNs) are emerging as a powerful modeling tool that integrates physical laws with deep learning techniques. While most research has focused on modeling the entire dynamics of interconnected systems, the…

Systems and Control · Electrical Eng. & Systems 2024-11-11 G. J. E. van Otterdijk , S. Moradi , S. Weiland , R. Tóth , N. O. Jaensson , M. Schoukens

An open source software package for performing dynamic RMS simulation of small to medium-sized power systems is presented, written entirely in the Python programming language. The main objective is to facilitate fast prototyping of new wide…

Systems and Control · Electrical Eng. & Systems 2021-01-11 Hallvar Haugdal , Kjetil Uhlen

This chapter gives a self-contained review of the how standard open quantum system Hamiltonians can be mapped analytically onto representations in which the environments appear as one dimensional harmonic chains with nearest neighbour…

Quantum Physics · Physics 2011-12-30 Alex W. Chin , Susana F. Huelga , Martin B. Plenio

API Phonons is a Python software package to predict the transport dynamics of heat-carrying phonons. Using the powerful syntax of Python, this package provides modules and functions interfacing between different packages for atomistic…

Materials Science · Physics 2025-01-08 Xin Qian , Guanda Quan , Te-Huan Liu , Ronggui Yang

Molecular dynamics (MD) simulation has long been the principal computational tool for exploring protein conformational landscapes and dynamics, but its application is limited by high computational cost. We present ProTDyn, a foundation…

Biological Physics · Physics 2025-10-02 Yikai Liu , Haoyang Zheng , Lining Mao , Yanbin Wang , Ming Chen , Guang Lin

We present an open-source Python package, SpinWaveToolkit (SWT), for (semi-)analytical modeling of spin-wave dynamics in thin ferromagnetic films and exchange-coupled magnetic bilayers. SWT combines analytical models based on the…

Mesoscale and Nanoscale Physics · Physics 2026-02-02 Jan Klíma , Ondřej Wojewoda , Jakub Krčma , Martin Hrtoň , Dominik Pavelka , Jakub Holobrádek , Michal Urbánek

We have developed PyTIE (Python Topological Indices Expressions) which is defined as the collections of Python packages such as PyTIE D, PyTIE DS, PyTIE SMS DE, and PyTIE SMS DSE, which are open-source software packages and cross-platform…

Chemical Physics · Physics 2025-11-03 Sahaya Vijay Jeyaraj , Roy S , Govardhan S , Tony Augustine , Jyothish K

We present an open source Python 3 library aimed at practitioners of molecular simulation, especially Monte Carlo simulation. The aims of the library are to facilitate the generation of simulation data for a wide range of problems; and to…

We present an application, EasyScan_HEP, for connecting programs to scan the parameter space of High Energy Physics (HEP) models using various sampling algorithms. We develop EasyScan_HEP according to the principle of flexibility and…

High Energy Physics - Phenomenology · Physics 2023-12-04 Liangliang Shang , Yang Zhang

Multi-Task Learning (MTL) has shown its importance at user products for fast training, data efficiency, reduced overfitting etc. MTL achieves it by sharing the network parameters and training a network for multiple tasks simultaneously.…

Machine Learning · Computer Science 2022-12-08 Brijraj Singh , Swati Gupta , Mayukh Das , Praveen Doreswamy Naidu , Sharan Kumar Allur

This paper presents the philosophy, design and feature-set of Neural Network Distiller, an open-source Python package for DNN compression research. Distiller is a library of DNN compression algorithms implementations, with tools, tutorials…

Machine Learning · Computer Science 2019-10-29 Neta Zmora , Guy Jacob , Lev Zlotnik , Bar Elharar , Gal Novik

In recent years, numerical simulations have become indispensable for addressing complex astrophysical problems. The MagnetoHydroDynamics (MHD) framework represents a key tool for investigating the dynamical evolution of astrophysical…

Instrumentation and Methods for Astrophysics · Physics 2025-09-18 Giancarlo Mattia , Daniele Crocco , David Melon Fuksman , Matteo Bugli , Vittoria Berta , Eleonora Puzzoni , Andrea Mignone , Bhargav Vaidya

Recently, we have theoretically proposed and experimentally demonstrated an exact and efficient quantum simulation of photosynthetic light harvesting in nuclear magnetic resonance (NMR), cf. B. X. Wang, \textit{et al.} npj Quantum…

WavePacket is an open-source program package for the numerical simulation of quantum-mechanical dynamics. It can be used to solve time-independent or time-dependent linear Schr\"odinger and Liouville-von Neumann-equations in one or more…

Quantum Physics · Physics 2023-02-09 Burkhard Schmidt , Ulf Lorenz

The article presents the torchosr package - a Python package compatible with PyTorch library - offering tools and methods dedicated to Open Set Recognition in Deep Neural Networks. The package offers two state-of-the-art methods in the…

Machine Learning · Computer Science 2024-02-12 Joanna Komorniczak , Pawel Ksieniewicz

High-fidelity computational fluid dynamics (CFD) is widely used for thermal-fluid design, but repeated CFD solves remain expensive for design optimization, uncertainty analysis, and digital-twin workflows. Recently, our team has…

Fluid Dynamics · Physics 2026-05-28 Daniel Curl , Han Hu

We present the molecular hyperdynamics algorithm and its implementation to the nonorthogonal tight-binding model NTBM and the corresponding software. Due to its multiscale structure, the proposed approach provides the long time scale…

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