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FluidDyn is a project to foster open-science and open-source in the fluid dynamics community. It is thought of as a research project to channel open-source dynamics, methods and tools to do science. We propose a set of Python packages…

Other Computer Science · Computer Science 2019-04-10 Pierre Augier , Ashwin Vishnu Mohanan , Cyrille Bonamy

The udkm1Dsim toolbox is a collection of Python classes and routines to simulate the thermal, structural, and magnetic dynamics after laser excitation as well as the according X-ray scattering response in one-dimensional sample structures.…

Computational Physics · Physics 2021-05-31 Daniel Schick

Matrix product states (MPS), a tensor network designed for one-dimensional quantum systems, has been recently proposed for generative modeling of natural data (such as images) in terms of `Born machine'. However, the exponential decay of…

Machine Learning · Statistics 2019-05-13 Song Cheng , Lei Wang , Tao Xiang , Pan Zhang

Data-intensive applications impact many domains, and their steadily increasing size and complexity demands high-performance, highly usable environments. We integrate a set of ideas developed in various data science and data engineering…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-02 Supun Kamburugamuve , Chathura Widanage , Niranda Perera , Vibhatha Abeykoon , Ahmet Uyar , Thejaka Amila Kanewala , Gregor von Laszewski , Geoffrey Fox

Machine learning potential-driven molecular dynamics (MD) simulations have significantly enhanced the predictive accuracy of thermal transport properties across diverse materials. However, extracting phonon-mode-resolved insights from these…

Computational Physics · Physics 2025-09-18 Ting Liang , Wenwu Jiang , Ke Xu , Hekai Bu , Zheyong Fan , Wengen Ouyang , Jianbin Xu

Introduction. Treatment planning systems (TPS) are an essential component for simulating and optimizing a radiation therapy treatment before administering it to the patient. It ensures that the tumor is well covered and the dose to the…

We are upgrading the Python-version of RTNI, which symbolically integrates tensor networks over the Haar-distributed unitary matrices. Now, PyRTNI2 can treat the Haar-distributed orthogonal matrices and the real and complex normal Gaussian…

Computational Physics · Physics 2023-09-18 Motohisa Fukuda

Recently we presented TTC, a domain-specific compiler for tensor transpositions. Despite the fact that the performance of the generated code is nearly optimal, due to its offline nature, TTC cannot be utilized in all the application codes…

Mathematical Software · Computer Science 2017-05-12 Paul Springer , Tong Su , Paolo Bientinesi

We present a new open-source Python package for exact diagonalization and quantum dynamics of spin(-photon) chains, called QuSpin, supporting the use of various symmetries in 1-dimension and (imaginary) time evolution for chains up to 32…

Computational Physics · Physics 2017-02-15 Phillip Weinberg , Marin Bukov

Simulating from the multivariate truncated normal distribution (MTN) is required in various statistical applications yet remains challenging in high dimensions. Currently available algorithms and their implementations often fail when the…

Computation · Statistics 2022-10-04 Zhenyu Zhang , Andrew Chin , Akihiko Nishimura , Marc A. Suchard

This paper discusses the implementation of a tactical network simulation tool. The tool is called Tactical Network Modeller (TNM). TNM uses some novel techniques to simplify the building of the network model using graph theory constrained…

Networking and Internet Architecture · Computer Science 2015-08-25 Stuart Marsden , Jouko Vankka

Tensor network states are an indispensable tool for the simulation of strongly correlated quantum many-body systems. In recent years, tree tensor network states (TTNS) have been successfully used for two-dimensional systems and to benchmark…

Quantum Physics · Physics 2026-01-23 Thomas Barthel

We present a compendium of numerical simulation techniques, based on tensor network methods, aiming to address problems of many-body quantum mechanics on a classical computer. The core setting of this anthology are lattice problems in low…

Nonlinear Optical Spectroscopy is a well-developed field with theoretical and experimental advances that have aided multiple fields including chemistry, biology and physics. However, accurate quantum dynamical simulations based on model…

Quantum Physics · Physics 2023-12-19 S. A. Shah , Hao Li , Eric R. Bittner , Carlos Silva , Andrei Piryatinski

Large-scale tensor network simulations are crucial for developing robust complexity-theoretic bounds on classical quantum simulation, enabling circuit cutting approaches, and optimizing circuit compilation, all of which aid efficient…

Quantum Physics · Physics 2026-01-09 Aaron C. Hoyt , Jonathan S. Bersson , Sean Garner , Chenxu Liu , Ang Li

PyMembrane is a software package for simulating liquid and elastic membranes using a discretisation of the continuum description based on unstructured triangulated two-dimensional meshes embedded in three-dimensional space. The package is…

Soft Condensed Matter · Physics 2023-08-25 D. A. Matoz-Fernandez , Siyu Li , Monica Olvera de la Cruz , Rastko Sknepnek

Emerging quantum sensors are increasingly envisioned as components of hybrid quantum-classical high-performance computing, enabling new capabilities in scientific, cyber-physical, and machine-learning pipelines. However, their practical…

Quantum Physics · Physics 2026-05-07 Jason Ludmir , Nicholas S. DiBrita , Jason Han , Tirthak Patel

The Python package pylimer-tools is a comprehensive toolkit for computational studies of polymer networks, particularly bead-spring networks. The package provides functionality to generate polymer networks using Monte Carlo (MC) procedures…

Soft Condensed Matter · Physics 2025-08-18 Tim Bernhard , Fabian Schwarz , Andrei A. Gusev

The development of spiking neural network simulation software is a critical component enabling the modeling of neural systems and the development of biologically inspired algorithms. Existing software frameworks support a wide range of…

Neural and Evolutionary Computing · Computer Science 2019-03-27 Hananel Hazan , Daniel J. Saunders , Hassaan Khan , Darpan T. Sanghavi , Hava T. Siegelmann , Robert Kozma

pyGDM is a python toolkit for electro-dynamical simulations in nano-optics based on the Green Dyadic Method (GDM). In contrast to most other coupled-dipole codes, pyGDM uses a generalized propagator, which allows to cost-efficiently solve…

Computational Physics · Physics 2020-01-28 Peter R. Wiecha
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