Related papers: HiCMamba: Enhancing Hi-C Resolution and Identifyin…

Multimodal image fusion aims to integrate information from different imaging techniques to produce a comprehensive, detail-rich single image for downstream vision tasks. Existing methods based on local convolutional neural networks (CNNs)…

Efficient encoding and representation of large 3D molecular structures with high fidelity is critical for biomolecular design applications. Despite this, many representation learning approaches restrict themselves to modeling smaller…

Snapshot Compressive Imaging (SCI) enables fast spectral imaging but requires effective decoding algorithms for hyperspectral image (HSI) reconstruction from compressed measurements. Current CNN-based methods are limited in modeling…

Denoising is a crucial preprocessing step for hyperspectral images (HSIs) due to noise arising from intra-imaging mechanisms and environmental factors. Long-range spatial-spectral correlation modeling is beneficial for HSI denoising but…

Chromatin is a polymer complex of DNA and proteins that regulates gene expression. The three-dimensional structure and organization of chromatin controls DNA transcription and replication. High-throughput chromatin conformation capture…

Hyperspectral Image Classification (HSC) presents significant challenges owing to the high dimensionality and intricate nature of Hyperspectral (HS) data. While traditional Machine Learning (TML) approaches have demonstrated effectiveness,…

Semantic Change Detection (SCD) from remote sensing imagery requires models balancing extensive spatial context, computational efficiency, and sensitivity to class-imbalanced land-cover transitions. While Convolutional Neural Networks excel…

Medical image segmentation models struggle to achieve efficient global context modeling and long-range dependency reasoning under practical computational budgets. In this work, we propose a hybrid architecture utilizing U-Mamba with Heat…

Hi-C sequencing is widely used for analyzing chromosomal interactions. In this study, we propose "superimposed Hi-C" which features paired EcoP15I sites in a linker to facilitate sticky-end ligation with target DNAs. Superimposed Hi-C…

Transformers have revolutionized image modeling tasks with adaptations like DeIT, Swin, SVT, Biformer, STVit, and FDVIT. However, these models often face challenges with inductive bias and high quadratic complexity, making them less…

Recent advances in computational pathology have leveraged vision-language models to learn joint representations of Hematoxylin and Eosin (HE) images with spatial transcriptomic (ST) profiles. However, existing approaches typically align HE…

We present a minimal computational model, which allows very fast, on-the-fly construction of three dimensional haploid interphase genomes from single cell Hi-C contact maps using the HOOMD-blue molecular dynamics package on graphics…

Multicategory remote object counting is a fundamental task in computer vision, aimed at accurately estimating the number of objects of various categories in remote images. Existing methods rely on CNNs and Transformers, but CNNs struggle to…

Hepatocellular carcinoma (HCC) is a common type of liver cancer whose early-stage diagnosis is a common challenge, mainly due to the manual assessment of hematoxylin and eosin-stained whole slide images, which is a time-consuming process…

State space models have shown significant promise in Natural Language Processing (NLP) and, more recently, computer vision. This paper introduces a new methodology leveraging Mamba and Masked Autoencoder networks for point cloud data in…

Community detection (CD) algorithms are applied to Hi-C data to discover new communities of loci in the 3D conformation of human and mouse DNA. We find that CD has some distinct advantages over pre-existing methods: (1) it is capable of…

Cell detection in pathological images presents unique challenges due to densely packed objects, subtle inter-class differences, and severe background clutter. In this paper, we propose CellMamba, a lightweight and accurate one-stage…

Nuclei panoptic segmentation supports cancer diagnostics by integrating both semantic and instance segmentation of different cell types to analyze overall tissue structure and individual nuclei in histopathology images. Major challenges…

Fake artefacts for discriminating between bonafide and fake audio can exist in both short- and long-range segments. Therefore, combining local and global feature information can effectively discriminate between bonafide and fake audio. This…

Modeling daily hand interactions often struggles with severe occlusions, such as when two hands overlap, which highlights the need for robust feature learning in 3D hand pose estimation (HPE). To handle such occluded hand images, it is…