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The Collective Variables Dashboard is a software tool for real-time, seamless exploration of molecular structures and trajectories in a customizable space of collective variables. The Dashboard arises from the integration of the Collective…

Computational Physics · Physics 2022-02-21 Jérôme Hénin , Laura J. S. Lopes , Giacomo Fiorin

Protein-protein interaction networks (PPIN) enable the study of cellular processes in organisms. Visualizing PPINs in extended reality (XR), including virtual reality (VR) and mixed reality (MR), is crucial for exploring subnetworks,…

Multimedia · Computer Science 2024-02-07 Busra Senderin , Nurcan Tuncbag , Elif Surer

The reasoning gap between large and compact vision-language models (VLMs) limits the deployment of medical AI on portable clinical devices. Compact VLMs of 2--4B parameters can run on resource-constrained hardware but lack the multi-step…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Runze Ma , Shunbo Jia , Haonan Lyu , Guo Liu , Caizhi Liao

Synthesizing medical images remains challenging due to limited annotated pathological data, modality domain gaps, and the complexity of representing diffuse pathologies such as liver cirrhosis. Existing methods often struggle to maintain…

Computer Vision and Pattern Recognition · Computer Science 2025-07-28 Onkar Susladkar , Gayatri Deshmukh , Yalcin Tur , Gorkhem Durak , Ulas Bagci

In recent years, vision-language models (VLMs) have advanced open-vocabulary mapping, enabling mobile robots to simultaneously achieve environmental reconstruction and high-level semantic understanding. While integrated object cognition…

Robotics · Computer Science 2025-02-25 Yinan Deng , Bicheng Yao , Yihang Tang , Yi Yang , Yufeng Yue

While Vision Language Models (VLMs) have demonstrated remarkable capabilities in general visual understanding, their application in the chemical domain has been limited, with previous works predominantly focusing on text and thus…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Xuanle Zhao , Shuxin Zeng , Xinyuan Cai , Xiang Cheng , Duzhen Zhang , Xiuyi Chen , Bo Xu

Results: We present an application that enables the quantitative analysis of multichannel 5-D (x, y, z, t, channel) and large montage confocal fluorescence microscopy images. The image sequences show stem cells together with blood vessels,…

Drug discovery through virtual screening (VS) has become a popular strategy for identifying hits against protein targets. Alongside VS, molecular design further expands accessible chemical space. Together, these approaches have the…

Biomolecules · Quantitative Biology 2025-10-15 Shanzhuo Zhang , Xianbin Ye , Donglong He , Yueyang Huang , Xiaonan Zhang , Xiaomin Fang

We present DyMU, an efficient, training-free framework that dynamically reduces the computational burden of vision-language models (VLMs) while maintaining high task performance. Our approach comprises two key components. First, Dynamic…

Computer Vision and Pattern Recognition · Computer Science 2025-05-13 Zhenhailong Wang , Senthil Purushwalkam , Caiming Xiong , Silvio Savarese , Heng Ji , Ran Xu

Streaming video large language models (LLMs) are increasingly used for real-time multimodal tasks such as video captioning, question answering, conversational agents, and augmented reality. However, these models face fundamental memory and…

Image and Video Processing · Electrical Eng. & Systems 2025-12-25 Donghyuk Kim , Sejeong Yang , Wonjin Shin , Joo-Young Kim

Volumetric video has emerged as a prominent medium within the realm of eXtended Reality (XR) with the advancements in computer graphics and depth capture hardware. Users can fully immersive themselves in volumetric video with the ability to…

Multimedia · Computer Science 2023-10-19 Kaiyuan Hu , Yongting Chen , Kaiying Han , Junhua Liu , Haowen Yang , Yili Jin , Boyan Li , Fangxin Wang

We present a novel method for the interactive construction and rendering of extremely large molecular scenes, capable of representing multiple biological cells in atomistic detail. Our method is tailored for scenes, which are procedurally…

Graphics · Computer Science 2024-06-11 Ruwayda Alharbi , Ondřej Strnad , Tobias Klein , Ivan Viola

Large-scale medical biobanks provide imaging data complemented by extensive tabular information, such as clinical measurements or demographics. However, this abundance of tabular attributes does not reflect real-world datasets, where only a…

Computer Vision and Pattern Recognition · Computer Science 2026-05-27 Marta Hasny , Laura Daza , Keno Bressem , Maxime Di Folco , Julia Schnabel

To overcome the well-known memory bottleneck of AI chips, 3D stacked architectures that employ advanced packaging technology with high-density through-silicon vias (TSVs) pins have proven to be a promising solution. The 3D-stacked AI chip…

Hardware Architecture · Computer Science 2026-04-30 Yiqi Liu , Noelle Crawford , Michael Wang , Jilong Xue , Jian Huang

The availability of open-source molecular simulation software packages allows scientists and engineers to focus on running and analyzing simulations without having to write, parallelize, and validate their own simulation software. While…

Computational Physics · Physics 2025-10-03 Simon Gravelle , Cecilia M. S. Alvares , Jacob R. Gissinger , Axel Kohlmeyer

With recent advancements in Large Multimodal Models (LMMs) across various domains, a novel prompting method called visual referring prompting has emerged, showing significant potential in enhancing human-computer interaction within…

Computer Vision and Pattern Recognition · Computer Science 2023-12-08 Zongjie Li , Chaozheng Wang , Chaowei Liu , Pingchuan Ma , Daoyuan Wu , Shuai Wang , Cuiyun Gao

The increasing size of cosmological simulations has led to the need for new visualization techniques. We focus on Smoothed Particle Hydrodynamical (SPH) simulations run with the GADGET code and describe methods for visually accessing the…

RUMD is a general purpose, high-performance molecular dynamics (MD) simulation package running on graphical processing units (GPU's). RUMD addresses the challenge of utilizing the many-core nature of modern GPU hardware when simulating…

The output of an automated theorem prover is usually presented by using a text format, they are often too heavy to be understood. In model checking setting, it would be helpful if one can observe the structure of models and the verification…

Logic in Computer Science · Computer Science 2017-02-16 Jian Liu , Ying Jiang , Yanyun Chen , Qing Zhou

Latest advances have achieved realistic virtual try-on (VTON) through localized garment inpainting using latent diffusion models, significantly enhancing consumers' online shopping experience. However, existing VTON technologies neglect the…

Computer Vision and Pattern Recognition · Computer Science 2024-08-07 Fei Shen , Xin Jiang , Xin He , Hu Ye , Cong Wang , Xiaoyu Du , Zechao Li , Jinhui Tang