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The host's odor serves as a critical biological tracking signal in the host-seeking process of mosquitoes, and its heterogeneity significantly influences the transmission of mosquito-borne diseases. In this study, we propose a…

Populations and Evolution · Quantitative Biology 2025-09-30 Haonan Zhong , Marina Lima , Andrea Pugliese , Michela Sabbatino , Cinzia Soresina , Tamas Tekeli

Modern security, infrastructure, and safety-critical systems increasingly operate in environments characterised by disruption, uncertainty, physical damage, and degraded communications. Conventional digital technologies -- centralised…

Emerging Technologies · Computer Science 2026-02-12 Andrew Adamatzky

Bacteriophage-bacteria interactions are central to microbial ecology, influencing evolution, biogeochemical cycles, and pathogen behavior. Most theoretical models assume static environments and passive bacterial hosts, neglecting the joint…

Biological Physics · Physics 2025-12-10 Hao-Neng Luo , Zhi-Xi Wu , Jian-Yue Guan

In this paper we study a nonlinear reaction-diffusion system which models an infectious disease caused by bacteria such as those for cholera. One of the significant features in this model is that a certain portion of the recovered human…

Analysis of PDEs · Mathematics 2022-02-01 Hong-Ming Yin , Jun Zou

Understanding the processes that give rise to quantitative measurements associated with molecular sequence data remains an important issue in statistical phylogenetics. Examples of such measurements include geographic coordinates in the…

Populations and Evolution · Quantitative Biology 2015-12-31 Mandev S. Gill , Lam Si Tung Ho , Guy Baele , Philippe Lemey , Marc A. Suchard

Turkey hosts almost 3.5M refugees and has to face a humanitarian emergency of unprecedented levels. We use mobile phone data to map the mobility patterns of both Turkish and Syrian refugees, and use these patterns to build data-driven…

Populations and Evolution · Quantitative Biology 2019-01-15 Paolo Bosetti , Piero Poletti , Massimo Stella , Bruno Lepri , Stefano Merler , Manlio De Domenico

Summary 1. Infectious disease outbreaks in plants threaten ecosystems, agricultural crops and food trade. Currently, several fungal diseases are affecting forests worldwide, posing a major risk to tree species, habitats and consequently…

Populations and Evolution · Quantitative Biology 2018-12-18 S. Orozco-Fuentes , G. Griffiths , M. J. Holmes , R. Ettelaie , J. Smith , A. W. Baggaley , N. G. Parker

We present an accurate two-dimensional mathematical model for steak cooking based on Flory-Rehner theory. The model treats meat as a poroelastic medium saturated with fluid. Heat from cooking induces protein matrix deformation and moisture…

Mastitis is a billion dollar health problem for the modern dairy industry, with implications for antibiotic resistance. The use of AI techniques to identify the early onset of this disease, thus has significant implications for the…

Machine Learning · Computer Science 2021-01-08 Cathal Ryan , Christophe Guéret , Donagh Berry , Medb Corcoran , Mark T. Keane , Brian Mac Namee

An ordinary differential model is proposed to understand the role of egg quiescence on the efficacy of releasing Wolbachia-infected mosquitoes to control arbovirus transmission. The model admits up to five equilibrium points and four…

Populations and Evolution · Quantitative Biology 2025-07-17 Luís E. S. Lopes , Cláudia P. Ferreira

This study presents a comprehensive analysis of a two-patch, two-life stage SI model without recovery from infection, focusing on the dynamics of disease spread and host population viability in natural populations. The model, inspired by…

Populations and Evolution · Quantitative Biology 2024-02-13 Jimmy Calvo-Monge , Jorge Arroyo-Esquivel , Alyssa Gehman , Fabio Sanchez

We introduce a novel method for reconstructing surface temperatures through occluding forest vegetation by combining signal processing and machine learning. Our goal is to enable fully automated aerial wildfire monitoring using autonomous…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Mohamed Youssef , Lukas Brunner , Klaus Rundhammer , Gerald Czech , Oliver Bimber

A previously established multiscale population genetics model states that fitness can be inferred from the physical properties of proteins under the physiological assumption that a loss of stability by any protein confers the lethal…

Biomolecules · Quantitative Biology 2009-06-03 Peiqiu Chen , Eugene I. Shakhnovich

Antimicrobial resistance (AMR) poses a significant threat to public health by increasing mortality, extending hospital stays, and increasing healthcare costs. It affects people of all ages and affects health services, veterinary medicine,…

Dynamical Systems · Mathematics 2023-06-12 Alissen Peterson , Jhoana P. Romero-Leiton , Pablo Aguirre , Kamal R. Acharya , Bouchra Nasri

How important is resource depletion (e.g. depletion of target cells) in controlling infection within a host? And how can we distinguish between resource depletion and other mechanisms that may contribute to decline of pathogen load or lead…

Cell Behavior · Quantitative Biology 2017-05-09 Hasan Ahmed , James Moore , Balaji Manicassamy , Adolfo Garcia-Sastre , Andreas Handel , Rustom Antia

Recent field investigations of photosynthetic bacteria living in geothermal hot spring environments have revealed surprisingly complex ecosystems, with an unexpected level of genetic diversity. One case of particular interest involves the…

Biological Physics · Physics 2013-05-30 Anna Klales , James Duncan , Elizabeth Janus Nett , Suzanne Amador Kane

Despite the fact that grouping behavior has been actively studied for over a century, the relative importance of the numerous proposed fitness benefits of grouping remain unclear. We use a digital model of evolving prey under simulated…

Populations and Evolution · Quantitative Biology 2015-11-18 Randal S. Olson , Patrick B. Haley , Fred C. Dyer , Christoph Adami

Infectious diseases in livestock are well-known to infect multiple hosts and persist through the combination of within- and between-host transmission pathways. Uncertainty remains about the epidemic consequences of the disease being…

Quantitative Methods · Quantitative Biology 2022-01-17 Nicolas C. Cardenas , Abagael L. Sykes , Francisco P. N. Lopes , Gustavo Machado

Recent work has attempted to use whole-genome sequence data from pathogens to reconstruct the transmission trees linking infectors and infectees in outbreaks. However, transmission trees from one outbreak do not generalize to future…

Quantitative Methods · Quantitative Biology 2023-10-24 Eben Kenah , Tom Britton , M. Elizabeth Halloran , Ira M. Longini

We derived an ordinary differential equation model to capture the disease dynamics during blood-stage malaria. The model was directly derived from an earlier age-structured partial differential equation model. The original model was…

Cell Behavior · Quantitative Biology 2017-07-03 Yi H. Yan , Jacob B. Aguilar , Elizabeth D. Trippe , Juan B. Gutierrez