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Many techniques have been developed, such as model compression, to make Deep Neural Networks (DNNs) inference more efficiently. Nevertheless, DNNs still lack excellent run-time dynamic inference capability to enable users trade-off accuracy…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Li Yang , Zhezhi He , Yu Cao , Deliang Fan

Our proposed deeply-supervised nets (DSN) method simultaneously minimizes classification error while making the learning process of hidden layers direct and transparent. We make an attempt to boost the classification performance by studying…

Machine Learning · Statistics 2017-04-26 Chen-Yu Lee , Saining Xie , Patrick Gallagher , Zhengyou Zhang , Zhuowen Tu

Deep learning methods are widely applied in digital pathology to address clinical challenges such as prognosis and diagnosis. As one of the most recent applications, deep models have also been used to extract molecular features from whole…

Image and Video Processing · Electrical Eng. & Systems 2022-03-29 Amir Safarpoor , Jason D. Hipp , H. R. Tizhoosh

Gene selection plays a pivotal role in oncology research for improving outcome prediction accuracy and facilitating cost-effective genomic profiling for cancer patients. This paper introduces two gene selection strategies for deep…

Genomics · Quantitative Biology 2024-03-05 Akhila Krishna , Ravi Kant Gupta , Pranav Jeevan , Amit Sethi

The paper presents a novel deep learning approach, which extracts latent information from trained Deep Neural Networks (DNNs) and derives concise representations that are analyzed in an effective, unified way for prediction purposes. It is…

Machine Learning · Computer Science 2020-09-22 D. Kollias , N. Bouas , Y. Vlaxos , V. Brillakis , M. Seferis , I. Kollia , L. Sukissian , J. Wingate , S. Kollias

Feature engineering remains a major bottleneck when creating predictive systems from electronic medical records. At present, an important missing element is detecting predictive regular clinical motifs from irregular episodic records. We…

Machine Learning · Statistics 2016-07-27 Phuoc Nguyen , Truyen Tran , Nilmini Wickramasinghe , Svetha Venkatesh

The design and analysis of communication systems typically rely on the development of mathematical models that describe the underlying communication channel. However, in some systems, such as molecular communication systems where chemical…

Signal Processing · Electrical Eng. & Systems 2018-02-23 Nariman Farsad , Andrea Goldsmith

Deep learning has been widely used for protein engineering. However, it is limited by the lack of sufficient experimental data to train an accurate model for predicting the functional fitness of high-order mutants. Here, we develop SESNet,…

Quantitative Methods · Quantitative Biology 2023-04-10 Mingchen Li , Liqi Kang , Yi Xiong , Yu Guang Wang , Guisheng Fan , Pan Tan , Liang Hong

Over the past decade, Interferometric Synthetic Aperture Radar (InSAR) has become a successful remote sensing technique. However, during the acquisition step, microwave reflections received at satellite are usually disturbed by strong…

Image and Video Processing · Electrical Eng. & Systems 2020-05-28 Xinyao Sun , Aaron Zimmer , Subhayan Mukherjee , Navaneeth Kamballur Kottayil , Parwant Ghuman , Irene Cheng

Faced with the scarcity of clean label data in real scenarios, seismic denoising methods based on supervised learning (SL) often encounter performance limitations. Specifically, when a model trained on synthetic data is directly applied to…

Geophysics · Physics 2023-11-07 Shijun Cheng , Zhiyao Cheng , Chao Jiang , Weijian Mao , Qingchen Zhang

Deep learning methods have impacted almost every research field, demonstrating notable successes in medical imaging tasks such as denoising and super-resolution. However, the prerequisite for deep learning is data at scale, but data sharing…

Medical Physics · Physics 2024-02-16 Yongyi Shi , Wenjun Xia , Chuang Niu , Christopher Wiedeman , Ge Wang

The lack of well-structured metadata annotations complicates there-usability and interpretation of the growing amount of publicly available RNA expression data. The machine learning-based prediction of metadata(data augmentation) can…

Machine Learning · Computer Science 2019-09-27 Jelena Fiosina , Maksims Fiosins , Stefan Bonn

Deep Linear and Nonlinear learning methods have already been vital machine learning methods for investigating the hierarchical features such as functional connectivity in the human brain via functional Magnetic Resonance signals; however,…

Machine Learning · Computer Science 2022-09-14 Wei Zhang , Yu Bao

Deep neural networks (DNNs) have proven to be quite effective in a vast array of machine learning tasks, with recent examples in cyber security and autonomous vehicles. Despite the superior performance of DNNs in these applications, it has…

Machine Learning · Computer Science 2017-08-22 Qinglong Wang , Wenbo Guo , Kaixuan Zhang , Alexander G. Ororbia , Xinyu Xing , Xue Liu , C. Lee Giles

This paper introduces an innovative framework designed for progressive (granular in time to onset) prediction of seizures through the utilization of a Deep Learning (DL) methodology based on non-invasive multi-modal sensor networks.…

Signal Processing · Electrical Eng. & Systems 2024-11-05 Ali Saeizadeh , Douglas Schonholtz , Joseph S. Neimat , Pedram Johari , Tommaso Melodia

Deep learning has become a powerful tool in computational biology, revolutionising the analysis and interpretation of biological data over time. In our article review, we delve into various aspects of deep learning in computational biology.…

Coherent noise regularly plagues seismic recordings, causing artefacts and uncertainties in products derived from down-the-line processing and imaging tasks. The outstanding capabilities of deep learning in denoising of natural and medical…

Geophysics · Physics 2022-06-02 Sixiu Liu , Claire Birnie , Tariq Alkhalifah

Since the advent of CRISPR-Cas9, a groundbreaking gene-editing technology that enables precise genomic modifications via a short RNA guide sequence, there has been a marked increase in the accessibility and application of this technology…

Quantitative Methods · Quantitative Biology 2024-09-11 Condy Bao , Fuxiao Liu

Since microRNAs (miRNAs) play a crucial role in post-transcriptional gene regulation, miRNA identification is one of the most essential problems in computational biology. miRNAs are usually short in length ranging between 20 and 23 base…

Machine Learning · Computer Science 2016-05-04 Seunghyun Park , Seonwoo Min , Hyunsoo Choi , Sungroh Yoon

We introduce a deep learning (DL) framework for inverse problems in imaging, and demonstrate the advantages and applicability of this approach in passive synthetic aperture radar (SAR) image reconstruction. We interpret image recon-…

Computer Vision and Pattern Recognition · Computer Science 2018-03-14 Bariscan Yonel , Eric Mason , Birsen Yazıcı