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Counting non-isomorphic tree-like multigraphs that include self-loops and multiple edges is an important problem in combinatorial enumeration, with applications in chemical graph theory, polymer science, and network modeling. Traditional…
In mathematical phylogenetics, the time-consistent galled trees provide a simple class of rooted binary network structures that can be used to represent a variety of different biological phenomena. We study the enumerative combinatorics of…
This paper introduces a new combinatorial framework for modeling the growth of binary trees through a discrete evolution process that incorporates a growing rule and an extinction rule. Building upon the theory of increasingly labeled…
This paper investigates two involutions on binary trees. One is the mirror symmetry of binary trees which combined with the classical bijection $\varphi$ between binary trees and plane trees answers an open problem posed by Bai and Chen.…
We look at a family of meta-Fibonacci sequences which arise in studying the number of leaves at the largest level in certain infinite sequences of binary trees, restricted compositions of an integer, and binary compact codes. For this…
A compacted binary tree is a directed acyclic graph encoding a binary tree in which common subtrees are factored and shared, such that they are represented only once. We show that the number of compacted binary trees of size $n$ grows…
Dyck paths (also balanced brackets and Dyck words) are among the most heavily studied Catalan families. This paper is a continuation of [2, 3]. In the paper we enumerate the terms of the OEIS A036991, Dyck numbers, and construct a…
A binary relation on graphs is recursively enumerable if and only if it can be computed by a formula in monadic second-order logic. The latter means that the formula defines a set of graphs, in the usual way, such that each "computation…
Trees are useful entities allowing to model data structures and hierarchical relationships in networked decision systems ubiquitously. An ordered tree is a rooted tree where the order of the subtrees (children) of a node is significant. In…
Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…
We introduce bud generating systems, which are used for combinatorial generation. They specify sets of various kinds of combinatorial objects, called languages. They can emulate context-free grammars, regular tree grammars, and synchronous…
We characterize the generating function of bipartite planar maps counted according to the degree distribution of their black and white vertices. This result is applied to the solution of the hard particle and Ising models on random planar…
This paper is devoted to a systematic study of a class of binary trees encoding the structure of rational numbers both from arithmetic and dynamical point of view. The paper is divided into two parts. The first one is a critical review of…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…
The theme of this article is the algebraic combinatorics of leaf-labeled rooted binary trees and forests of such trees. The structure of a Hopf operad is defined on the vector spaces spanned by forests of leaf-labeled, rooted, binary trees.…
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…
We present families of combinatorial classes described as trees with nodes that can carry one of two types of "flowers": integer partitions or integer compositions. Two parameters on the flowers of trees will be considered: the number of…
We define a bivariate polynomial for unlabeled rooted trees and show that the polynomial of an unlabeled rooted tree $T$ is the generating function of a class of subtrees of $T$. We prove that the polynomial is a complete isomorphism…
We consider the enumeration of plane trees (rooted ordered trees) whose vertices are colored according to a specific coloring rule that prescribes which possible pairs of colors can occur as the colors of a parent vertex and its child. This…