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We investigate the numerical discretization of a two-stream kinetic system with an internal state, such system has been introduced to model the motion of cells by chemotaxis. This internal state models the intracellular methylation level.…

Analysis of PDEs · Mathematics 2020-06-11 Nicolas Vauchelet , Shugo Yasuda

This paper is framed in a series of studies on attraction-repulsion chemotaxis models combining different effects: nonlinear diffusion and sensitivities and logistic sources, for the dynamics of the cell density, and consumption and/or…

Analysis of PDEs · Mathematics 2023-05-17 Tongxing Li , Silvia Frassu , Giuseppe Viglialoro

Collections of cells exhibit coherent migration during morphogenesis, cancer metastasis, and wound healing. In many cases, bigger clusters split, smaller sub-clusters collide and reassemble, and gaps continually emerge. The connections…

Biological Physics · Physics 2021-03-31 Ushasi Roy , Andrew Mugler

The goal of this paper is to exhibit a critical mass phenomenon occuring in a model for cell self-organization via chemotaxis. The very well known dichotomy arising in the behavior of the macroscopic Keller-Segel system is derived at the…

Analysis of PDEs · Mathematics 2015-05-13 Nikolaos Bournaveas , Vincent Calvez

Cells in tissues can organize into a broad spectrum of structures according to their function. Drastic changes of organization, such as epithelial-mesenchymal transitions or the formation of spheroidal aggregates, are often associated…

Biological Physics · Physics 2016-12-22 Bart Smeets , Ricard Alert , Jiri Pesek , Ignacio Pagonabarraga , Herman Ramon , Romaric Vincent

Cell migration in vivo is often guided by chemical signals. Such chemotaxis, such as performed by immune cells migrating to a wound site, is complicated by the complex geometry inside living tissues. In this study, we extend our theoretical…

We consider the Keller-Segel model for chemotaxis with a nonlinear diffusion coefficent and a singular sensitivity function. We show the existence of travelling waves for wave speeds above a critical value, and establish local…

Analysis of PDEs · Mathematics 2012-02-20 Martin Meyries

Chemotaxis, the movement of an organism in response to chemical stimuli, is a typical feature of many microbiological systems. In particular, the social amoeba \textit{Disctyostelium discoideum} is widely used as a model organism, but it is…

Cell Behavior · Quantitative Biology 2025-08-04 Daniele Proverbio , Marco Maggiora

Transport of molecular motors along protein filaments in a half-closed geometry is a common feature of biologically relevant processes in cellular protrusions. Using a lattice gas model we study how the interplay between active and…

Biological Physics · Physics 2017-03-30 Isabella R. Graf , Erwin Frey

A novel theory for cell differentiation is proposed, based on simulations with interacting artificial cells which have metabolic networks within, and divide into two when the final product is accumulated. Results of simulations with coupled…

adap-org · Physics 2015-06-30 Kunihiko Kaneko , Tetsuya Yomo

Microorganisms often perform chemotaxis, (i.e., sensing and moving toward a region with a higher concentration of an attractive chemical) by changing the rate of tumbling for random walk. We studied several models with internal adaptive…

Statistical Mechanics · Physics 2009-11-11 Masayo Inoue , Kunihiko Kaneko

Aggregation of animal cells in culture comprises a series of motility, collision and adhesion processes of basic relevance for tissue engineering, bioseparations, oncology research and \textit{in vitro} drug testing. In the present paper, a…

Statistical Mechanics · Physics 2010-10-06 S. G. Alves , M. L. Martins

The emergence of large scale structures in biological systems, and in particular the formation of lines of hierarchy, is observed in many scales, from collections of cells to groups of insects to herds of animals. Motivated by phenomena in…

Adaptation and Self-Organizing Systems · Physics 2023-07-12 James Greene , Eitan Tadmor , Ming Zhong

The application of single-cell molecular profiling coupled with spatial technologies has enabled charting cellular heterogeneity in reference tissues and in disease. This new wave of molecular data has highlighted the expected diversity of…

Tissues and Organs · Quantitative Biology 2024-03-12 Ricardo Omar Ramirez Flores , Philipp Sven Lars Schäfer , Leonie Küchenhoff , Julio Saez-Rodriguez

Spatiotemporal patterns in multicellular systems are important to understanding tissue dynamics, for instance, during embryonic development and disease. Here, we use a multiphase field model to study numerically the behavior of a…

Soft Condensed Matter · Physics 2025-02-13 Michael Chiang , Austin Hopkins , Benjamin Loewe , M. Cristina Marchetti , Davide Marenduzzo

We propose a mechanism of cell motility which is based on contraction and does not require protrusion. The contraction driven translocation of a cell is due to internal flow of the cytoskeleton generated by molecular motors. Each motor…

Biological Physics · Physics 2013-02-19 Pierre Recho , Thibault Putelat , Lev Truskinovsky

We consider the singular limit of a chemotaxis model of bacterial collective motion recently introduced in arXiv:2009.11048 [math.AP]. The equation models aggregation-diffusion phenomena with advection that is discontinuous and depends…

Analysis of PDEs · Mathematics 2025-08-28 Maria Gualdani , Mikel Ispizua , Nicola Zamponi

Experimental studies of cell motility in culture have shown that under adequate conditions these living organisms possess the ability to organize themselves into complex structures. Such structures may exhibit a synergy that greatly…

Statistical Mechanics · Physics 2021-10-27 G. Nakamura , M. Badoual , E. Fabiani , C. Deroulers

Collective cell migration governs a range of physiological and pathological processes, from tissue morphogenesis to cancer invasion, in which topological defects arise as an inevitable consequence of frequent cellular rearrangement and…

Soft Condensed Matter · Physics 2026-04-01 Jiusi Zhang , Chung Wing Chan , Bo Li , Rui Zhang

Over the past decades, nonlocal models have been widely used to describe aggregation phenomena in biology, physics, engineering, and the social sciences. These are often derived as mean-field limits of attraction-repulsion agent-based…

Cell Behavior · Quantitative Biology 2025-05-14 Carles Falcó , Ruth E. Baker , José A. Carrillo
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