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Metal-organic frameworks (MOFs) are porous crystalline materials with broad applications such as carbon capture and drug delivery, yet accurately predicting their 3D structures remains a significant challenge. While Large Language Models…

Machine Learning · Computer Science 2026-01-15 Mianzhi Pan , JianFei Li , Peishuo Liu , Botian Wang , Yawen Ouyang , Yiming Rong , Hao Zhou , Jianbing Zhang

Crystal structure prediction (CSP), which aims to predict the three-dimensional atomic arrangement of a crystal from its composition, is central to materials discovery and mechanistic understanding. However, given the composition in a unit…

Materials Science · Physics 2026-03-10 Shi Yin , Jinming Mu , Xudong Zhu , Linxin He

Artificial intelligence (AI) is increasingly used for the inverse design of materials, such as crystals and molecules. Existing AI research on molecules has integrated chemical structures of molecules with textual knowledge to adapt to…

Computation and Language · Computer Science 2025-02-25 Yang Jeong Park , Mayank Kumaran , Chia-Wei Hsu , Elsa Olivetti , Ju Li

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

In the real world, a molecule is a 3D geometric structure. Compared to 1D SMILES sequences and 2D molecular graphs, 3D molecules represent the most informative molecular modality. Despite the rapid progress of autoregressive-based language…

Computational Engineering, Finance, and Science · Computer Science 2025-08-15 Lei Jiang , Shuzhou Sun , Biqing Qi , Yuchen Fu , Xiaohua Xu , Yuqiang Li , Dongzhan Zhou , Tianfan Fu

Crystalline materials are a fundamental component in next-generation technologies, yet modeling their distribution presents unique computational challenges. Of the plausible arrangements of atoms in a periodic lattice only a vanishingly…

Machine Learning · Computer Science 2024-06-10 Benjamin Kurt Miller , Ricky T. Q. Chen , Anuroop Sriram , Brandon M Wood

Data representation remains a fundamental challenge in machine learning, particularly when adapting sequence-based architectures like Transformers and Large Language Models (LLMs) for structured tabular data. Existing methods often fail to…

Machine Learning · Computer Science 2025-08-05 Kayvan Karim , Hani Ragab Hassen. Hadj Batatia

We present MeshLLM, a novel framework that leverages large language models (LLMs) to understand and generate text-serialized 3D meshes. Our approach addresses key limitations in existing methods, including the limited dataset scale when…

Generating novel crystalline materials has the potential to lead to advancements in fields such as electronics, energy storage, and catalysis. The defining characteristic of crystals is their symmetry, which plays a central role in…

Property prediction and inverse structural design of catalytic materials are typically modeled as two independent tasks: the former predicts target properties from given structures, whereas the latter generates candidate structures…

Artificial Intelligence · Computer Science 2026-05-22 Yanjie Li , Jian Xu , Xu-Yao Zhang , Shiming Xiang , Nian Ran , Weijun Li , Cheng-Lin Liu

We present a comparison of word-based and character-based sequence-to-sequence models for data-to-text natural language generation, which generate natural language descriptions for structured inputs. On the datasets of two recent generation…

Computation and Language · Computer Science 2018-10-12 Glorianna Jagfeld , Sabrina Jenne , Ngoc Thang Vu

In this work, we introduce Unique3D, a novel image-to-3D framework for efficiently generating high-quality 3D meshes from single-view images, featuring state-of-the-art generation fidelity and strong generalizability. Previous methods based…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Kailu Wu , Fangfu Liu , Zhihan Cai , Runjie Yan , Hanyang Wang , Yating Hu , Yueqi Duan , Kaisheng Ma

This paper provides a comprehensive analysis of the first shared task on End-to-End Natural Language Generation (NLG) and identifies avenues for future research based on the results. This shared task aimed to assess whether recent…

Computation and Language · Computer Science 2019-07-25 Ondřej Dušek , Jekaterina Novikova , Verena Rieser

Recent trends in neural network based text-to-speech/speech synthesis pipelines have employed recurrent Seq2seq architectures that can synthesize realistic sounding speech directly from text characters. These systems however have complex…

Computation and Language · Computer Science 2019-03-19 Gary Wang

The synthesis of inorganic crystalline materials is essential for modern technology, especially in quantum materials development. However, designing efficient synthesis workflows remains a significant challenge due to the precise…

In Natural Language Processing (NLP), it is important to detect the relationship between two sequences or to generate a sequence of tokens given another observed sequence. We call the type of problems on modelling sequence pairs as sequence…

Computation and Language · Computer Science 2018-10-26 Lei Yu

Machine learning (ML) is becoming increasingly popular for predicting material properties to accelerate materials discovery. Because material properties are strongly affected by its crystal structure, a key issue is converting the crystal…

Materials Science · Physics 2023-10-12 Hirofumi Tsuruta , Yukari Katsura , Masaya Kumagai

Artificial intelligence (AI) is transforming materials science, enabling both theoretical advancements and accelerated materials discovery. Recent progress in crystal generation models, which design crystal structures for targeted…

Materials Science · Physics 2025-02-25 Zhuoyuan Li , Siyu Liu , Beilin Ye , David J. Srolovitz , Tongqi Wen

We present Liquid, an auto-regressive generation paradigm that seamlessly integrates visual comprehension and generation by tokenizing images into discrete codes and learning these code embeddings alongside text tokens within a shared…

Computer Vision and Pattern Recognition · Computer Science 2025-04-14 Junfeng Wu , Yi Jiang , Chuofan Ma , Yuliang Liu , Hengshuang Zhao , Zehuan Yuan , Song Bai , Xiang Bai

Generative models are revolutionizing materials discovery by enabling inverse design-direct generation of structures from desired properties. However, existing approaches often struggle to ensure inherent stability and symmetry while…

Materials Science · Physics 2025-07-28 Zhilong Song , Chongyi Ling , Qiang Li , Qionghua Zhou , Jinlan Wang
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