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Several important aspects related to SARS-CoV-2 transmission are not well known due to a lack of appropriate data. However, mathematical and computational tools can be used to extract part of this information from the available data, like…

Populations and Evolution · Quantitative Biology 2022-04-01 Nicolas Franco , Pietro Coletti , Lander Willem , Leonardo Angeli , Adrien Lajot , Steven Abrams , Philippe Beutels , Christel Faes , Niel Hens

Many pathogens spread primarily via direct contact between infected and susceptible hosts. Thus, the patterns of contacts or contact network of a population fundamentally shapes the course of epidemics. While there is a robust and growing…

Populations and Evolution · Quantitative Biology 2012-08-01 Shweta Bansal , Lauren Ancel Meyers

The COVID-19 pandemic highlighted the critical role of human behavior in influencing infectious disease transmission and the need for models capturing this complex dynamic. We present an agent-based model integrating an epidemiological…

Social and Information Networks · Computer Science 2023-12-07 Konstantinos Mitsopoulos , Lawrence Baker , Christian Lebiere , Peter Pirolli , Mark Orr , Raffaele Vardavas

Pandemics, in addition to affecting the health of populations, can have huge impacts on their social and economic behavior. These factors, on the other hand, have the potential to feed back to and influence the disease spreading. It is…

Physics and Society · Physics 2022-09-28 Jan E. Snellman , Rafael A. Barrio , Kimmo K. Kaski , Maarit J. Korpi--Lagg

Mathematical models of infectious diseases, which are in principle analytically tractable, use two general approaches. The first approach, generally known as compartmental modeling, addresses the time evolution of disease propagation at the…

Populations and Evolution · Quantitative Biology 2010-09-16 Pierre-André Noël , Bahman Davoudi , Robert C. Brunham , Louis J. Dubé , Babak Pourbohloul

Understanding the factors that impact how a communicable disease like COVID-19 spreads is of central importance to mitigate future outbreaks. Traditionally, epidemic surveillance and forecasting analyses have focused on epidemiological data…

Physics and Society · Physics 2025-03-17 Léo Meynent , Michael Bang Petersen , Sune Lehmann , Benjamin F. Maier

The structure of heterogeneous networks and human mobility patterns profoundly influence the spreading of endemic diseases. In small-scale communities, individuals engage in social interactions within confined environments, such as homes…

Physics and Society · Physics 2025-05-20 Yusheng Li , Yichao Yao , Minyu Feng , Tina P. Benko , Matjaž Perc , Jernej Završnik

Because of its relevance to everyday life, the spreading of viral infections has been of central interest in a variety of scientific communities involved in fighting, preventing and theoretically interpreting epidemic processes. Recent…

When a new infectious disease (or a new strain of an existing one) emerges, as in the recent COVID-19 pandemic, different types of mobility restrictions are considered to slow down or mitigate the spread of the disease. The measures to be…

Physics and Society · Physics 2026-04-21 Jõao Gabriel Simões Delboni , Gabriel Fabricius

The interplay between disease spreading and personal risk perception is of key importance for modelling the spread of infectious diseases. We propose a planar system of ordinary differential equations (ODEs) to describe the co-evolution of…

Dynamical Systems · Mathematics 2023-05-09 Massimo A. Achterberg , Mattia Sensi

The COVID-19 pandemic has significantly challenged traditional epidemiological models due to factors such as delayed diagnosis, asymptomatic transmission, isolation-induced contact changes, and underreported mortality. In response to these…

Applications · Statistics 2025-03-10 Wenchen Liu , Chang Liu , Dehui Wang , Yiyuan She

We introduce a surveillance strategy specifically designed for urban areas to enhance preparedness and response to disease outbreaks by leveraging the unique characteristics of human behavior within urban contexts. By integrating data on…

In some systems, the behavior of the constituent units can create a `context' that modifies the direct interactions among them. This mechanism of indirect modification inspired us to develop a minimal model of context-dependent spreading.…

Physics and Society · Physics 2023-06-13 Giulio Burgio , Sergio Gómez , Alex Arenas

Understanding infectious disease transmission in institutional settings requires models that capture how contacts arise from structured routines, roles, and spatial constraints. In aged care facilities, interactions are driven by care…

Populations and Evolution · Quantitative Biology 2026-03-19 Haley Stone , C. Raina MacIntyre , Mohana Kunasekaran , Chris Poulos , David Heslop

The time variation of contacts in a networked system may fundamentally alter the properties of spreading processes and affect the condition for large-scale propagation, as encoded in the epidemic threshold. Despite the great interest in the…

Physics and Society · Physics 2015-04-14 Eugenio Valdano , Luca Ferreri , Chiara Poletto , Vittoria Colizza

The spread of COVID-19 revealed that transmission risk patterns are not homogenous across different cities and communities, and various heterogeneous features can influence the spread trajectories. Hence, for predictive pandemic monitoring,…

Machine Learning · Computer Science 2022-09-22 Junwei Ma , Bo Li , Qingchun Li , Chao Fan , Ali Mostafavi

In Fall 2020, several European countries reported rapid increases in COVID-19 cases along with growing estimates of the effective reproduction rates. Such an acceleration in epidemic spread is usually attributed to time-dependent effects,…

Populations and Evolution · Quantitative Biology 2022-11-30 Nazmi Burak Budanur , Björn Hof

We propose an epidemic model for the spread of vector-borne diseases. The model, which is built extending the classical susceptible-infected-susceptible model, accounts for two populations -- humans and vectors -- and for cross-contagion…

Systems and Control · Electrical Eng. & Systems 2025-10-21 Lorenzo Zino , Alessandro Casu , Alessandro Rizzo

We develop a general modelling framework for compartmental epidemiological systems structured by continuous variables which are linked to the levels of expression of compartment-specific traits. We start by formulating an individual-based…

Populations and Evolution · Quantitative Biology 2025-08-14 Emanuele Bernardi , Tommaso Lorenzi , Mattia Sensi , Andrea Tosin

We study extensions of the classical SIR model of epidemic spread. First, we consider a single population modified SIR epidemics model in which the contact rate is allowed to be an arbitrary function of the fraction of susceptible and…

Dynamical Systems · Mathematics 2021-12-17 Martina Alutto , Giacomo Como , Fabio Fagnani