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Replica Exchange (RE) simulations have emerged as an important algorithmic tool for the molecular sciences. RE simulations involve the concurrent execution of independent simulations which infrequently interact and exchange information. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-22 Antons Treikalis , Andre Merzky , Haoyuan Chen , Tai-Sung Lee , Darrin M. York , Shantenu Jha

Scaling automated formal verification to real-world projects requires resolving cross-module dependencies and global contexts, which are challenges overlooked by existing function-centric methods. We introduce RagVerus, a framework that…

Software Engineering · Computer Science 2025-02-11 Sicheng Zhong , Jiading Zhu , Yifang Tian , Xujie Si

Large language models that enhance software development tasks, such as code generation, code completion, and code question answering (QA), have been extensively studied in both academia and the industry. The models are integrated into…

Software Engineering · Computer Science 2025-01-08 Jialiang Chen , Kaifa Zhao , Jie Liu , Chao Peng , Jierui Liu , Hang Zhu , Pengfei Gao , Ping Yang , Shuiguang Deng

Recent advances in Large Language Models (LLMs) have enabled researchers to focus on practical repository-level tasks in software engineering domain. In this work, we consider a cornerstone task for automating work with software…

Machine Learning · Computer Science 2025-03-19 Aleksandra Eliseeva , Alexander Kovrigin , Ilia Kholkin , Egor Bogomolov , Yaroslav Zharov

Reproducing computational research is often assumed to be as simple as rerunning the original code with provided data. In practice, missing packages, fragile file paths, version conflicts, or incomplete logic frequently cause analyses to…

Software Engineering · Computer Science 2026-04-24 Syed Mehtab Hussain Shah , Frank Hopfgartner , Arnim Bleier

Recent advances have been improving the context windows of Large Language Models (LLMs). To quantify the real long-context capabilities of LLMs, evaluators such as the popular Needle in a Haystack have been developed to test LLMs over a…

Software Engineering · Computer Science 2024-06-11 Jiawei Liu , Jia Le Tian , Vijay Daita , Yuxiang Wei , Yifeng Ding , Yuhan Katherine Wang , Jun Yang , Lingming Zhang

Constructing large-scale datasets for the GitHub issue resolution task is crucial for both training and evaluating the software engineering capabilities of Large Language Models (LLMs). However, the existing GitHub issue resolution data…

Software Engineering · Computer Science 2026-01-06 Lianghong Guo , Yanlin Wang , Caihua Li , Wei Tao , Pengyu Yang , Jiachi Chen , Haoyu Song , Duyu Tang , Zibin Zheng

Code reproduction is a cornerstone of scientific validity, yet it remains a formidable challenge in computer networking research due to the scarcity of open-source implementations and the complexity of heterogeneous system architectures.…

Networking and Internet Architecture · Computer Science 2026-02-17 Yining Jiang , Yunxin Xu , Wenyun Xu , Yufan Zhu , Tangtang He , Haiying Huang , Letian Zhu , Qingyu Song , Qiang Su , Lizhao You , Lu Tang , Wanjin Feng , Yuchao Zhang , Linghe Kong , Qiao Xiang , Jiwu Shu

Agentic repository-level code understanding is essential for automating complex software engineering tasks, yet the field lacks reliable benchmarks. Existing evaluations often overlook the long tail topics and rely on popular repositories…

The rapid evolution of software libraries poses a considerable hurdle for code generation, necessitating continuous adaptation to frequent version updates while preserving backward compatibility. While existing code evolution benchmarks…

Agentic coding systems increasingly use large language models (LLMs) for software engineering tasks such as debugging, root cause analysis, and code review. However, many existing systems encode task logic, execution flow, and output…

Software Engineering · Computer Science 2026-05-18 Shubhi Asthana , Bing Zhang , Chad DeLuca , Hima Patel , Ruchi Mahindru

Existing code generation benchmarks for Large Language Models (LLMs) such as HumanEval and MBPP are designed to study LLMs' end-to-end performance, where the benchmarks feed a problem description in natural language as input and examine the…

Software Engineering · Computer Science 2025-02-27 Jiarong Wu , Songqiang Chen , Jialun Cao , Hau Ching Lo , Shing-Chi Cheung

Automated debugging, long pursued in a variety of fields from software engineering to cybersecurity, requires a framework that offers the building blocks for a programmable debugging workflow. However, existing debuggers are primarily…

Software Engineering · Computer Science 2025-06-06 Gabriele Digregorio , Roberto Alessandro Bertolini , Francesco Panebianco , Mario Polino

Large language models (LLMs) like GitHub Copilot and ChatGPT have emerged as powerful tools for code generation, significantly enhancing productivity and accelerating software development. However, existing benchmarks primarily focus on…

Software Engineering · Computer Science 2024-09-27 Yixi Wu , Pengfei He , Zehao Wang , Shaowei Wang , Yuan Tian , Tse-Hsun Chen

Modern Large Language Model (LLM) agents promise end to end assistance with real-world software tasks, yet existing benchmarks evaluate LLM agents almost exclusively in pre-baked environments where every dependency is pre-installed. To fill…

Software Engineering · Computer Science 2025-07-15 Avi Arora , Jinu Jang , Roshanak Zilouchian Moghaddam

Cloud computing has become a major approach to help reproduce computational experiments. Yet there are still two main difficulties in reproducing batch based big data analytics (including descriptive and predictive analytics) in the cloud.…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-13 Xin Wang , Pei Guo , Xingyan Li , Aryya Gangopadhyay , Carl E. Busart , Jade Freeman , Jianwu Wang

Establishing a docker-based replicability infrastructure offers the community a great opportunity: measuring the run time of information retrieval systems. The time required to present query results to a user is paramount to the users…

Information Retrieval · Computer Science 2019-07-11 Sebastian Hofstätter , Allan Hanbury

Large Language Models (LLMs) have exhibited significant proficiency in code debugging, especially in automatic program repair, which may substantially reduce the time consumption of developers and enhance their efficiency. Significant…

Software Engineering · Computer Science 2025-09-09 Jingjing Liu , Zeming Liu , Zihao Cheng , Mengliang He , Xiaoming Shi , Yuhang Guo , Xiangrong Zhu , Yuanfang Guo , Yunhong Wang , Haifeng Wang

Despite Large Language Models (LLMs) like GPT-4 achieving impressive results in function-level code generation, they struggle with repository-scale code understanding (e.g., coming up with the right arguments for calling routines),…

Large language model (LLM) coding agents can generate working code, but their solutions often accumulate complexity, duplication, and architectural debt. Human developers address such issues through refactoring: behavior-preserving program…

Software Engineering · Computer Science 2026-03-05 Alex Thillen , Niels Mündler , Veselin Raychev , Martin Vechev