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Existing datasets for coding agents evaluate performance on isolated, single pull request (PR) tasks in a stateless manner, failing to capture the reality of real-world software development where code changes accumulate, technical debt…

Software Engineering · Computer Science 2026-04-06 KN Ajay Shastry , Ganesh Senrayan , Shrey Satapara , Pranoy Panda , Chaitanya Devaguptapu

Recent advancements in large language models (LLMs) suggest great promises in code and proof generations. However, scaling automated formal verification to real-world projects requires resolving cross-module dependencies and global…

Software Engineering · Computer Science 2025-10-01 Si Cheng Zhong , Xujie Si

This article presents a study on the quality and execution of research code from publicly-available replication datasets at the Harvard Dataverse repository. Research code is typically created by a group of scientists and published together…

Software Engineering · Computer Science 2021-03-25 Ana Trisovic , Matthew K. Lau , Thomas Pasquier , Mercè Crosas

Motivation: This paper presents libRoadRunner 2.0, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed using Systems Biology Markup Language SBML). Results:…

Quantitative Methods · Quantitative Biology 2022-03-03 Ciaran Welsh , Jin Xu , Lucian Smith , Matthias König , Kiri Choi , Herbert M. Sauro

Manufacturable chip layouts must satisfy thousands of geometry-based design rules, and design rule checking (DRC) enforces them by running executable DRC scripts on layouts. Translating natural language rules into correct DRC scripts is…

Machine Learning · Computer Science 2026-05-18 Jinuk Kim , Junsoo Byun , Donghwi Hwang , Seong-Jin Park , Hyun Oh Song

Code-generating tools are increasingly used in software development, yet experience reports on conversational "vibe coding" under production constraints remain limited. This paper presents an experience report from a small full-stack team…

Software Engineering · Computer Science 2026-03-13 Md Nasir Uddin Shuvo , Md Aidul Islam , Md Mahade Hasan , Muhammad Waseem , Pekka Abrahamsson

R packages are the fundamental units of reproducible code in R, providing a mechanism for distributing user-developed code, documentation, and data. Docker is a virtualization technology that allows applications and their dependencies to be…

Quantitative Methods · Quantitative Biology 2023-03-23 V. P. Nagraj , Stephen D. Turner

Equipping LLMs with tool-use capabilities via Agentic Reinforcement Learning (Agentic RL) is bottlenecked by two challenges: the lack of scalable, robust execution environments and the scarcity of realistic training data that captures…

Code localization is a fundamental challenge in repository-level software engineering tasks such as bug fixing. While existing methods equip language agents with comprehensive tools/interfaces to fetch information from the repository, they…

Software Engineering · Computer Science 2026-02-10 Boshi Wang , Weijian Xu , Yunsheng Li , Mei Gao , Yujia Xie , Huan Sun , Dongdong Chen

Large Language Models (LLMs) are predominantly assessed based on their common sense reasoning, language comprehension, and logical reasoning abilities. While models trained in specialized domains like mathematics or coding have demonstrated…

Software Engineering · Computer Science 2026-01-08 Danny Brahman , Mohammad Mahoor

With open-source projects growing in size and complexity, manual compilation becomes tedious and error-prone, highlighting the need for automation to improve efficiency and accuracy. However, the complexity of compilation instruction search…

Software Engineering · Computer Science 2025-05-08 Li Hu , Guoqiang Chen , Xiuwei Shang , Shaoyin Cheng , Benlong Wu , Gangyang Li , Xu Zhu , Weiming Zhang , Nenghai Yu

Large Language Models (LLMs) exhibit remarkable code generation capabilities but falter when adapting to frequent updates in external library APIs. This critical limitation, stemming from reliance on outdated API knowledge from their…

Computation and Language · Computer Science 2025-11-25 Haoze Wu , Yunzhi Yao , Wenhao Yu , Ningyu Zhang

Large Language Models (LLMs) have demonstrated remarkable capabilities in various tasks, yet code generation remains a major challenge. Current approaches for obtaining high-quality code data primarily focus on (i) collecting large-scale…

Computation and Language · Computer Science 2025-02-18 Yichuan Ma , Yunfan Shao , Peiji Li , Demin Song , Qipeng Guo , Linyang Li , Xipeng Qiu , Kai Chen

Large language models are increasingly applied to various development scenarios. However, in on-chain transaction scenarios, even a minor error can cause irreversible loss for users. Existing evaluations often overlook execution accuracy…

Computation and Language · Computer Science 2026-04-08 Pei Yang , Wanyi Chen , Ke Wang , Lynn Ai , Eric Yang , Tianyu Shi

Evaluating the performance of Code Language Models (CLMs) for software engineering tasks, especially in multilingual and low-resource programming language settings, poses significant challenges. These challenges are primarily due to the…

Software Engineering · Computer Science 2024-11-26 Rohit Dandamudi , Gema Rodríguez-Pérez

Agents based on Large Language Models (LLMs) have shown promise for performing sophisticated software engineering tasks autonomously. In addition, there has been progress towards developing agents that can perform parts of the research…

Computation and Language · Computer Science 2026-04-23 Nicholas Edwards , Yukyung Lee , Yujun Audrey Mao , Yulu Qin , Sebastian Schuster , Najoung Kim

We introduce Agent2 RL-Bench, a compact diagnostic benchmark for evaluating agentic RL post-training, which tests whether LLM agents can autonomously design, implement, debug, and execute post-training pipelines that improve foundation…

Artificial Intelligence · Computer Science 2026-05-14 Wanyi Chen , Xiao Yang , Xu Yang , Tianming Sha , Qizheng Li , Zhuo Wang , Bowen Xian , Fang Kong , Weiqing Liu , Jiang Bian

Large repositories of source code for research tend to limit their utility to static analysis of the code, as they give no guarantees on whether the projects are compilable, much less runnable in any way. The immediate consequence of the…

Software Engineering · Computer Science 2018-04-13 Pedro Martins , Rohan Achar , Cristina V. Lopes

Generating high-quality code that solves complex programming tasks is challenging, especially with current decoder-based models that produce highly stochastic outputs. In code generation, even minor errors can easily break the entire…

Computation and Language · Computer Science 2025-04-15 Nikita Sorokin , Ivan Sedykh , Valentin Malykh

Automatically compiling open-source software (OSS) projects is a vital, labor-intensive, and complex task, which makes it a good challenge for LLM Agents. Existing methods rely on manually curated rules and workflows, which cannot adapt to…

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