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Related papers: K-Paths: Reasoning over Graph Paths for Drug Repur…

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Knowledge Graphs (KGs) structure real-world entities and their relationships into triples, enhancing machine reasoning for various tasks. While domain-specific KGs offer substantial benefits, their manual construction is often inefficient…

Computation and Language · Computer Science 2025-06-02 Jiaqi Sun , Shiyou Qian , Zhangchi Han , Wei Li , Zelin Qian , Dingyu Yang , Jian Cao , Guangtao Xue

Large Language Models (LLMs) excel at intuitive, implicit reasoning. Guiding LLMs to construct thought chains can enhance their deliberate reasoning abilities, but also faces challenges such as hallucination. Knowledge Graphs (KGs) can…

Computation and Language · Computer Science 2025-03-07 Guangyi Liu , Yongqi Zhang , Yong Li , Quanming Yao

The use of knowledge graphs for grounding agents in real-world Q&A applications has become increasingly common. Answering complex queries often requires multi-hop reasoning and the ability to navigate vast relational structures. Standard…

Artificial Intelligence · Computer Science 2026-04-03 Taraneh Ghandi , Hamidreza Mahyar , Shachar Klaiman

We introduce fs1, a simple yet effective method that improves the factuality of reasoning traces by collecting them from large reasoning models and grounding them in knowledge graph (KG) paths. We fine-tune eight instruction-tuned Large…

Computation and Language · Computer Science 2026-04-21 Mike Zhang , Johannes Bjerva , Russa Biswas

Pretrained Large Language Models (LLMs) have demonstrated various reasoning capabilities through language-based prompts alone, particularly in unstructured task settings (tasks purely based on language semantics). However, LLMs often…

Computation and Language · Computer Science 2024-08-30 Palaash Agrawal , Shavak Vasania , Cheston Tan

The rapid expansion of publicly-available medical data presents a challenge for clinicians and researchers alike, increasing the gap between the volume of scientific literature and its applications. The steady growth of studies and findings…

Artificial Intelligence · Computer Science 2025-08-06 Taine J. Elliott , Stephen P. Levitt , Ken Nixon , Martin Bekker

Unified graph representation learning aims to generate node embeddings, which can be applied to multiple downstream applications of graph analytics. However, existing studies based on graph neural networks and language models either suffer…

Computation and Language · Computer Science 2025-08-05 Wenbo Shang , Xuliang Zhu , Xin Huang

Despite recent progress, Graphic User Interface (GUI) agents powered by Large Language Models (LLMs) struggle with complex mobile tasks due to limited app-specific knowledge. While UI Transition Graphs (UTGs) offer structured navigation…

Knowledge graphs (KGs) have emerged as a powerful paradigm for structuring and leveraging diverse real-world knowledge, which serve as a fundamental technology for enabling cognitive intelligence systems with advanced understanding and…

Artificial Intelligence · Computer Science 2025-06-16 Guanglin Niu , Bo Li , Yangguang Lin

Biological pathways map gene-gene interactions that govern all human processes. Despite their importance, most ML models treat genes as unstructured tokens, discarding known pathway structure. The latest pathway-informed models capture…

Machine Learning · Computer Science 2025-09-03 Gavin Wong , Ping Shu Ho , Ivan Au Yeung , Ka Chun Cheung , Simon See

Drug repurposing plays a critical role in accelerating treatment discovery, especially for complex and rare diseases. Biomedical knowledge graphs (KGs), which encode rich clinical associations, have been widely adopted to support this task.…

Computation and Language · Computer Science 2025-10-15 Chengrui Xiang , Tengfei Ma , Xiangzheng Fu , Yiping Liu , Bosheng Song , Xiangxiang Zeng

Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare…

Computation and Language · Computer Science 2025-02-26 Yanjun Gao , Ruizhe Li , Emma Croxford , John Caskey , Brian W Patterson , Matthew Churpek , Timothy Miller , Dmitriy Dligach , Majid Afshar

Knowledge graphs provide structured and reliable information for many real-world applications, motivating increasing interest in combining large language models (LLMs) with graph-based retrieval to improve factual grounding. Recent…

Artificial Intelligence · Computer Science 2026-04-16 Yuchen Ying , Weiqi Jiang , Tongya Zheng , Yu Wang , Shunyu Liu , Kaixuan Chen , Mingli Song

Although Large Language Models (LLMs) have demonstrated potential in processing graphs, they struggle with comprehending graphical structure information through prompts of graph description sequences, especially as the graph size increases.…

Computation and Language · Computer Science 2024-12-17 Yukun Cao , Shuo Han , Zengyi Gao , Zezhong Ding , Xike Xie , S. Kevin Zhou

Large scale knowledge graphs (KGs) such as Freebase are generally incomplete. Reasoning over multi-hop (mh) KG paths is thus an important capability that is needed for question answering or other NLP tasks that require knowledge about the…

Computation and Language · Computer Science 2018-06-13 Wenpeng Yin , Yadollah Yaghoobzadeh , Hinrich Schütze

Large language models (LLMs) are increasingly used in the mental health domain, yet it remains unclear how well they capture related biomedical knowledge and how reliably they apply it to clinically salient structured judgments. Here, we…

Computation and Language · Computer Science 2026-05-18 Weixin Liu , Congning Ni , Shelagh A. Mulvaney , Susannah L. Rose , Murat Kantarcioglu , Bradley A. Malin , Zhijun Yin

Knowledge Graphs (KGs), as structured knowledge bases that organize relational information across diverse domains, provide a unified semantic foundation for cross-domain recommendation (CDR). By integrating symbolic knowledge with user-item…

Information Retrieval · Computer Science 2025-11-05 Yuhan Wang , Qing Xie , Zhifeng Bao , Mengzi Tang , Lin Li , Yongjian Liu

Retrieval-Augmented Generation (RAG) enhances language models by grounding responses in external information, yet explainability remains a critical challenge, particularly when retrieval relies on unstructured text. Knowledge graphs (KGs)…

Machine Learning · Computer Science 2025-07-14 Georgios Balanos , Evangelos Chasanis , Konstantinos Skianis , Evaggelia Pitoura

Large language models (LLMs) achieve strong results on knowledge graph question answering (KGQA), but most benchmarks assume complete knowledge graphs (KGs) where direct supporting triples exist. This reduces evaluation to shallow retrieval…

Artificial Intelligence · Computer Science 2025-12-18 Dongzhuoran Zhou , Yuqicheng Zhu , Xiaxia Wang , Hongkuan Zhou , Jiaoyan Chen , Steffen Staab , Yuan He , Evgeny Kharlamov

Knowledge Graphs (KGs) are essential for the functionality of GraphRAGs, a form of Retrieval-Augmented Generative Systems (RAGs) that excel in tasks requiring structured reasoning and semantic understanding. However, creating KGs for…

Computation and Language · Computer Science 2024-12-11 Ahan Bhatt , Nandan Vaghela , Kush Dudhia