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Related papers: K-Paths: Reasoning over Graph Paths for Drug Repur…

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LLMs have demonstrated remarkable capabilities in complex reasoning tasks, yet they often suffer from hallucinations and lack reliable factual grounding. Meanwhile, knowledge graphs (KGs) provide structured factual knowledge but lack the…

Computation and Language · Computer Science 2025-05-28 Xiangqing Shen , Fanfan Wang , Rui Xia

Knowledge Graphs (KGs) store human knowledge in the form of entities (nodes) and relations, and are used extensively in various applications. KG embeddings are an effective approach to addressing tasks like knowledge discovery, link…

Artificial Intelligence · Computer Science 2025-02-03 Ioannis Reklos , Jacopo de Berardinis , Elena Simperl , Albert Meroño-Peñuela

Knowledge graphs (KGs) are increasingly used to represent biomedical information in structured, interpretable formats. However, existing biomedical KGs often focus narrowly on molecular interactions or adverse events, overlooking the rich…

Artificial Intelligence · Computer Science 2025-10-01 Asmita Sengupta , David Antony Selby , Sebastian Josef Vollmer , Gerrit Großmann

Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation…

Quantitative Methods · Quantitative Biology 2025-11-14 Guofeng Meng , Li Shen , Qiuyan Zhong , Wei Wang , Haizhou Zhang , Xiaozhen Wang

Efficient inference for graph neural networks (GNNs) on large knowledge graphs (KGs) is essential for many real-world applications. GNN inference queries are computationally expensive and vary in complexity, as each involves a different…

Machine Learning · Computer Science 2026-04-21 Waleed Afandi , Hussein Abdallah , Ashraf Aboulnaga , Essam Mansour

Generative AI, particularly Large Language Models, increasingly integrates graph-based representations to enhance reasoning, retrieval, and structured decision-making. Despite rapid advances, there remains limited clarity regarding when,…

Artificial Intelligence · Computer Science 2026-04-21 Hamed Jelodar , Samita Bai , Mohammad Meymani , Parisa Hamedi , Roozbeh Razavi-Far , Ali Ghorbani

Dialogue systems powered by large pre-trained language models (LM) exhibit an innate ability to deliver fluent and natural-looking responses. Despite their impressive generation performance, these models can often generate factually…

Computation and Language · Computer Science 2021-09-15 Nouha Dziri , Andrea Madotto , Osmar Zaiane , Avishek Joey Bose

Neuroscience research publications encompass a vast wealth of knowledge. Accurately retrieving existing information and discovering new insights from this extensive literature is essential for advancing the field. However, when knowledge is…

Computation and Language · Computer Science 2025-10-28 Pralaypati Ta , Sriram Venkatesaperumal , Keerthi Ram , Mohanasankar Sivaprakasam

Sparse Knowledge Graphs (KGs) are commonly encountered in real-world applications, where knowledge is often incomplete or limited. Sparse KG reasoning, the task of inferring missing knowledge over sparse KGs, is inherently challenging due…

Computation and Language · Computer Science 2025-12-16 Yucan Guo , Saiping Guan , Miao Su , Zeya Zhao , Xiaolong Jin , Jiafeng Guo , Xueqi Cheng

Retrieval-Augmented Generation (RAG) has significantly mitigated the hallucinations of Large Language Models (LLMs) by grounding the generation with external knowledge. Recent extensions of RAG to graph-based retrieval offer a promising…

Machine Learning · Computer Science 2025-09-23 Jialin Chen , Houyu Zhang , Seongjun Yun , Alejandro Mottini , Rex Ying , Xiang Song , Vassilis N. Ioannidis , Zheng Li , Qingjun Cui

To tackle the problem of domain-specific knowledge scarcity within large language models (LLMs), knowledge graph-retrievalaugmented method has been proven to be an effective and efficient technique for knowledge infusion. However, existing…

Computation and Language · Computer Science 2024-06-07 Zhouyu Jiang , Ling Zhong , Mengshu Sun , Jun Xu , Rui Sun , Hui Cai , Shuhan Luo , Zhiqiang Zhang

In this paper, we present a novel diagnostic framework that integrates Knowledge Graphs (KGs) and Large Language Models (LLMs) to support system diagnostics in high-reliability systems such as nuclear power plants. Traditional diagnostic…

Artificial Intelligence · Computer Science 2025-09-01 Saman Marandi , Yu-Shu Hu , Mohammad Modarres

Large Language Models (LLMs) have greatly advanced knowledge graph question answering (KGQA), yet existing systems are typically optimized for returning highly relevant but predictable answers. A missing yet desired capacity is to exploit…

Computation and Language · Computer Science 2025-11-18 Mengying Wang , Chenhui Ma , Ao Jiao , Tuo Liang , Pengjun Lu , Shrinidhi Hegde , Yu Yin , Evren Gurkan-Cavusoglu , Yinghui Wu

Graph-based retrieval-augmented generation (GraphRAG) exploits structured knowledge to support knowledge-intensive reasoning. However, most existing methods treat graphs as intermediate artifacts, and the few subgraph-based retrieval…

Information Retrieval · Computer Science 2026-03-10 Haonan Yuan , Qingyun Sun , Junhua Shi , Mingjun Liu , Jiaqi Yuan , Ziwei Zhang , Xingcheng Fu , Jianxin Li

Feature selection in Knowledge Graphs (KGs) are increasingly utilized in diverse domains, including biomedical research, Natural Language Processing (NLP), and personalized recommendation systems. This paper delves into the methodologies…

Machine Learning · Computer Science 2024-06-24 Sisi Shao , Pedro Henrique Ribeiro , Christina Ramirez , Jason H. Moore

The increasing reliance on Large Language Models (LLMs) for health information seeking can pose severe risks due to the potential for misinformation and the complexity of these topics. This paper introduces KNOWNET a visualization system…

Human-Computer Interaction · Computer Science 2024-09-27 Youfu Yan , Yu Hou , Yongkang Xiao , Rui Zhang , Qianwen Wang

Large language models (LLMs) are transforming the way information is retrieved with vast amounts of knowledge being summarized and presented via natural language conversations. Yet, LLMs are prone to highlight the most frequently seen…

Computation and Language · Computer Science 2024-02-20 Julien Delile , Srayanta Mukherjee , Anton Van Pamel , Leonid Zhukov

The automatic construction of knowledge graphs (KGs) is an important research area in medicine, with far-reaching applications spanning drug discovery and clinical trial design. These applications hinge on the accurate identification of…

Computation and Language · Computer Science 2025-01-30 Vahan Arsenyan , Spartak Bughdaryan , Fadi Shaya , Kent Small , Davit Shahnazaryan

LLM post-training has primarily relied on large text corpora and human feedback, without capturing the structure of domain knowledge. This has caused models to struggle dealing with complex reasoning tasks, especially for high-stakes…

Computation and Language · Computer Science 2026-01-21 Dezhao Song , Guglielmo Bonifazi , Frank Schilder , Jonathan Richard Schwarz

Scientific inquiry requires systems-level reasoning that integrates heterogeneous experimental data, cross-domain knowledge, and mechanistic evidence into coherent explanations. While Large Language Models (LLMs) offer inferential…

Artificial Intelligence · Computer Science 2026-01-09 Isabella A. Stewart , Markus J. Buehler