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Training deep graph neural networks (GNNs) poses a challenging task, as the performance of GNNs may suffer from the number of hidden message-passing layers. The literature has focused on the proposals of {over-smoothing} and…

Machine Learning · Statistics 2023-02-27 Yirui Liu , Xinghao Qiao , Liying Wang , Jessica Lam

Despite Graph neural networks' significant performance gain over many classic techniques in various graph-related downstream tasks, their successes are restricted in shallow models due to over-smoothness and the difficulties of…

Machine Learning · Computer Science 2023-12-15 Jin Li , Qirong Zhang , Shuling Xu , Xinlong Chen , Longkun Guo , Yang-Geng Fu

Sheaf Neural Networks (SNNs) naturally extend Graph Neural Networks (GNNs) by endowing a cellular sheaf over the graph, equipping nodes and edges with vector spaces and defining linear mappings between them. While the attached geometric…

Machine Learning · Computer Science 2024-07-31 Ferran Hernandez Caralt , Guillermo Bernárdez Gil , Iulia Duta , Pietro Liò , Eduard Alarcón Cot

Graph Convolutional Networks (GCNs) are powerful for processing graph-structured data and have achieved state-of-the-art performance in several tasks such as node classification, link prediction, and graph classification. However, it is…

Machine Learning · Computer Science 2021-10-19 Langzhang Liang , Cuiyun Gao , Shiyi Chen , Shishi Duan , Yu pan , Junjin Zheng , Lei Wang , Zenglin Xu

Graph Neural Networks (GNNs) have emerged as a cornerstone of deep learning, with most existing methods rooted in graph signal processing and diffusion equations to model message passing. However, these approaches inherently suffer from the…

Machine Learning · Computer Science 2026-05-26 Zexing Zhao , Guangsi Shi , Yu Gong , Tianyu Wang , Shirui Pan , Hongye Cheng , Yuxiao Li

The relationship between Layer Normalization (LN) placement and the oversmoothing phenomenon remains underexplored. We identify a critical dilemma: Pre-LN architectures avoid oversmoothing but suffer from the curse of depth, while Post-LN…

Machine Learning · Computer Science 2025-12-11 Weiqi Guan , Junlin He

While graph neural networks (GNNs) have allowed researchers to successfully apply neural networks to non-Euclidean domains, deep GNNs often exhibit lower predictive performance than their shallow counterparts. This phenomena has been…

Machine Learning · Computer Science 2025-05-20 Keqin Wang , Yulong Yang , Ishan Saha , Christine Allen-Blanchette

In node classification tasks, graph convolutional neural networks (GCNs) have demonstrated competitive performance over traditional methods on diverse graph data. However, it is known that the performance of GCNs degrades with increasing…

Machine Learning · Computer Science 2022-11-29 Yujun Yan , Milad Hashemi , Kevin Swersky , Yaoqing Yang , Danai Koutra

Physics-informed Graph Neural Networks have achieved remarkable performance in learning through graph-structured data by mitigating common GNN challenges such as over-smoothing, over-squashing, and heterophily adaption. Despite these…

Machine Learning · Computer Science 2024-06-13 Dai Shi , Andi Han , Lequan Lin , Yi Guo , Zhiyong Wang , Junbin Gao

We analyze graph smoothing with \emph{mean aggregation}, where each node successively receives the average of the features of its neighbors. Indeed, it has quickly been observed that Graph Neural Networks (GNNs), which generally follow some…

Machine Learning · Statistics 2022-10-11 Nicolas Keriven

Oversmoothing is a fundamental challenge in graph neural networks (GNNs): as the number of layers increases, node embeddings become increasingly similar, and model performance drops sharply. Traditionally, oversmoothing has been quantified…

Machine Learning · Computer Science 2026-02-24 Kaicheng Zhang , Piero Deidda , Desmond Higham , Francesco Tudisco

Signed link prediction in social networks aims to reveal the underlying relationships (i.e. links) among users (i.e. nodes) given their existing positive and negative interactions observed. Most of the prior efforts are devoted to learning…

Social and Information Networks · Computer Science 2021-06-23 Yadan Luo , Zi Huang , Hongxu Chen , Yang Yang , Mahsa Baktashmotlagh

Many real-world graphs (networks) are heterogeneous with different types of nodes and edges. Heterogeneous graph embedding, aiming at learning the low-dimensional node representations of a heterogeneous graph, is vital for various…

Social and Information Networks · Computer Science 2021-12-15 Wentao Xu , Yingce Xia , Weiqing Liu , Jiang Bian , Jian Yin , Tie-Yan Liu

Graph Convolutional Network (GCN) with the powerful capacity to explore graph-structural data has gained noticeable success in recent years. Nonetheless, most of the existing GCN-based models suffer from the notorious over-smoothing issue,…

Machine Learning · Computer Science 2023-04-17 Zhaoliang Chen , Zhihao Wu , Zhenghong Lin , Shiping Wang , Claudia Plant , Wenzhong Guo

Graph neural networks (GNNs) have evolved into one of the most popular deep learning architectures. However, GNNs suffer from over-smoothing node information and, therefore, struggle to solve tasks where global graph properties are…

Machine Learning · Computer Science 2023-08-31 Bernhard Schäfl , Lukas Gruber , Johannes Brandstetter , Sepp Hochreiter

Graph Neural Networks (GNNs) have proven effective in various medical imaging applications, such as automated disease diagnosis. However, due to the local neighborhood aggregation paradigm in message passing which characterizes these…

Machine Learning · Computer Science 2024-11-05 K. Mancini , I. Rekik

Graph Neural Networks (GNNs) have shown their great ability in modeling graph structured data. However, real-world graphs usually contain structure noises and have limited labeled nodes. The performance of GNNs would drop significantly when…

Machine Learning · Computer Science 2022-07-26 Enyan Dai , Wei Jin , Hui Liu , Suhang Wang

It has been observed that message-passing graph neural networks (GNN) sometimes struggle to maintain a healthy balance between the efficient/scalable modeling of long-range dependencies across nodes while avoiding unintended consequences…

Machine Learning · Computer Science 2025-05-21 Yongyi Yang , Tang Liu , Yangkun Wang , Zengfeng Huang , David Wipf

Message passing neural networks have shown a lot of success on graph-structured data. However, there are many instances where message passing can lead to over-smoothing or fail when neighboring nodes belong to different classes. In this…

Signed graph clustering is a critical technique for discovering community structures in graphs that exhibit both positive and negative relationships. We have identified two significant challenges in this domain: i) existing signed spectral…

Social and Information Networks · Computer Science 2025-02-11 Peiyao Zhao , Xin Li , Zeyu Zhang , Mingzhong Wang , Xueying Zhu , Lejian Liao
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