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Motivated by the bijection between Schnyder labelings of a plane triangulation and partitions of its inner edges into three trees, we look for binary labelings for quadrangulations (whose edges can be partitioned into two trees). Our…
This paper studies increasing trees on $n$ labeled vertices, in which labels increase from the root to the leaves. It is known that the number of binary increasing trees coincides with the number of alternating permutations (Euler numbers).…
A model of genomic sequence evolution on a species tree should include not only a sequence substitution process, but also a coalescent process, since different sites may evolve on different gene trees due to incomplete lineage sorting.…
The general Markov plus invariable sites (GM+I) model of biological sequence evolution is a two-class model in which an unknown proportion of sites are not allowed to change, while the remainder undergo substitutions according to a Markov…
Inference of the evolutionary histories of species, commonly represented by a species tree, is complicated by the divergent evolutionary history of different parts of the genome. Different loci on the genome can have different histories…
Commuting involution graphs have been studied for finite Coxeter groups and for affine groups of classical type. The purpose of this short note is to establish some general results for commuting involution graphs in affine Coxeter groups,…
Temporal sequences of terrains arise in various application areas. To analyze them efficiently, one generally needs a suitable abstraction of the data as well as a method to compare and match them over time. In this paper we consider merge…
Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…
Explaining why and how a tree $t$ structurally differs from another tree $t^\star$ is a question that is encountered throughout computer science, including in understanding tree-structured data such as XML or JSON data. In this article, we…
We provide a logarithmic upper bound for the disentangling number on unordered lists of leaf labeled trees. This results is useful for analyzing phylogenetic mixture models. The proof depends on interpreting multisets of trees as high…
The stable profile of the boundary of a plant's leaf fluctuating in the direction transversal to the leaf's surface is described in the framework of a model called a "surface \`a godets". It is shown that the information on the profile is…
Using the theory of Properly Embedded Graphs developed in an earlier work we define an involutory duality on the set labeled non-crossing trees that lifts the obvious duality in the set of unlabeled non-crossing trees. The set of…
For cubic pencils we define the notion of an involution curve. This is a curve which intersects each curve of the pencil in exactly one non-base point of the pencil. Involution curves can be used to construct integrable maps of the plane…
A model of pattern formation in living systems is presented. The pattern is achieved by the sequential interaction of two signaling pathways. The coupling of the pattern to the (thick) epithelial sheet changes is given, when the Gauss…
A recent paper (Manceau and Lambert, 2016) developed a novel approach for describing two well-defined notions of 'species' based on a phylogenetic tree and a phenotypic partition. In this paper, we explore some further combinatorial…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
This paper is about the study of F-transforms based on overlap and grouping maps, residual and co-residual implicator over complete lattice from both constructive and axiomatic approaches. Further, the duality, basic properties, and the…
This paper introduces advances in the geometry of the transforms for cross ratio of four points in a line in the Desargues affine plane. The results given here have a clean, based Desargues affine plan axiomatic's and definitions of…
Let $\sigma_1$ and $\sigma_2$ be commuting involutions of a semisimple algebraic group $G$. This yields a $Z_2\times Z_2$-grading of $\g=\Lie(G)$, $\g=\bigoplus_{i,j=0,1}\g_{ij}$, and we study invariant-theoretic aspects of this…
Shapley values are one of the main tools used to explain predictions of tree ensemble models. The main alternative to Shapley values are Banzhaf values that have not been understood equally well. In this paper we make a step towards filling…