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An involution is usually defined as a mapping that is its own inverse. In this paper, we study quaternion involutions that have the additional properties of distribution over addition and multiplication. We review formal axioms for such…
We explore new connections between complete non-ambiguous trees (CNATs) and permutations. We give a bijection between tree-like tableaux and a specific subset of CNATs. This map is used to establish and solve a recurrence relation for the…
In an upward planar 2-slope drawing of a digraph, edges are drawn as straight-line segments in the upward direction without crossings using only two different slopes. We investigate whether a given upward planar digraph admits such a…
In this paper we investigate an extremal problem on binary phylogenetic trees. Given two such trees $T_1$ and $T_2$, both with leaf-set ${1,2,...,n}$, we are interested in the size of the largest subset $S \subseteq {1,2,...,n}$ of leaves…
The leafage of a digraph is the minimum number of leaves in a host tree in which it has a subtree intersection representation. We discuss bounds on the leafage in terms of other parameters (including Ferrers dimension), obtaining a string…
A tanglegram consists of two rooted binary trees and a perfect matching between their leaves, and a planar tanglegram is one that admits a layout with no crossings. We show that the problem of generating planar tanglegrams uniformly at…
We construct a refined bijection $\phi$ between alternating permutations and 0-1-2 increasing trees with degree at most 2. It satisfies that the first element of alternating permutation $\pi$ is equal to the first vertex in $\phi(\pi)$ in…
Many real-world complex networks arise as a result of a competition between growth and rewiring processes. Usually the initial part of the evolution is dominated by growth while the later one rather by rewiring. The initial growth allows…
The evolution of various competing cell types in tissues, and the resulting persistent tissue population, is studied numerically and analytically in a particle-based model of active tissues. Mutations change the properties of cells in…
Understanding predictions made by Machine Learning models is critical in many applications. In this work, we investigate the performance of two methods for explaining tree-based models- Tree Interpreter (TI) and SHapley Additive…
The vector space spanned by rooted forests admits two graded bialgebra structures. The first is defined by A. Connes and D. Kreimer using admissible cuts, and the second is defined by D. Calaque, K. Ebrahimi-Fard and the second author using…
The Aldous diffusion is a conjectured Markov process on the space of real trees that is the continuum analogue of discrete Markov chains on binary trees. We construct this conjectured process via a consistent system of stationary evolutions…
Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…
Let $p(m)$ (respectively, $q(m)$) be the maximum number $k$ such that any tree with $m$ edges can be transformed by contracting edges (respectively, by removing vertices) into a caterpillar with $k$ edges. We derive closed-form expressions…
Our main results in this paper are new equidistributions on plane trees and $132$-avoiding permutations, two closely related objects. As for the former, we discover a characteristic for vertices of plane trees that is equally distributed as…
This paper introduces the notion of involution module, the first generalization of the modular decomposition of 2-structure which has a unique linear-sized decomposition tree. We derive an O(n^2) decomposition algorithm and we take…
There is a classical geometric construction which uses a binary quadratic form to define an involution on the space of binary d-ics. We give a complete characterization of a general class of such involutions which are definable using…
We discuss the nature of the two-stage percolation transition on the enhanced binary tree in order to explain the disagreement in the estimation of the second transition probability between the one in our recent paper (J. Phys. A:Math.…
Innovation and its complement exnovation describe the progression of realized possibilities from the past to the future, and the process depends on the structure of the underlying graph. For example, the phylogenetic tree represents the…
Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here the rooted triple and quartet metrizations are introduced, and applied to formulate novel fast methods of…