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In today's world of big data, computational analysis has become a key driver of biomedical research. Recent exponential growth in the volume of available omics data has reshaped the landscape of contemporary biology, creating demand for a…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-09 Jaqueline J. Brito , Thiago Mosqueiro , Jeremy Rotman , Victor Xue , Douglas J. Chapski , Juan De la Hoz , Paulo Matias , Lana Martin , Alex Zelikovsky , Matteo Pellegrinni , Serghei Mangul

The task of dataset distillation aims to find a small set of synthetic images such that training a model on them reproduces the performance of the same model trained on a much larger dataset of real samples. Existing distillation methods…

Computer Vision and Pattern Recognition · Computer Science 2025-11-21 George Cazenavette , Antonio Torralba , Vincent Sitzmann

Inferring the structural properties of a protein from its amino acid sequence is a challenging yet important problem in biology. Structures are not known for the vast majority of protein sequences, but structure is critical for…

Machine Learning · Computer Science 2019-10-17 Tristan Bepler , Bonnie Berger

Artificial Intelligence & Nanotechnology are promising areas for the future of humanity. While Deep Learning based Computer Vision has found applications in many fields from medicine to automotive, its application in nanotechnology can open…

Computer Vision and Pattern Recognition · Computer Science 2022-01-05 Rajagopal A , Nirmala V , Andrew J , Arun Muthuraj Vedamanickam.

The design, analysis and application of a volumetric convolutional neural network (VCNN) are studied in this work. Although many CNNs have been proposed in the literature, their design is empirical. In the design of the VCNN, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2017-02-02 Xiaqing Pan , Yueru Chen , C. -C. Jay Kuo

Autocatalytic fibril nucleation has recently been proposed to be a determining factor for the spread of neurodegenerative diseases, but the same process could also be exploited to amplify minute quantities of protein aggregates in a…

Quantitative Methods · Quantitative Biology 2016-09-23 Giulio Costantini , Zoe Budrikis , Alessandro Taloni , Alexander K. Buell , Stefano Zapperi , Caterina A. M. La Porta

Microfluidic devices offer numerous advantages in medical applications, including the capture of single cells in microwell-based platforms for genomic analysis. As the cost of sequencing decreases, the demand for high-throughput single-cell…

Computational Engineering, Finance, and Science · Computer Science 2024-09-13 Xueying Zhao , Yan Chen , Yuefu Jiang , Amie Radenbaugh , Jamie Moskwa , Devon Jensen

Vision language models (VLM) have demonstrated remarkable performance across various downstream tasks. However, understanding fine-grained visual-linguistic concepts, such as attributes and inter-object relationships, remains a significant…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Wujian Peng , Sicheng Xie , Zuyao You , Shiyi Lan , Zuxuan Wu

The rapid advancement of GenAI technology over the past few years has significantly contributed towards highly realistic deepfake content generation. Despite ongoing efforts, the research community still lacks a large-scale and reasoning…

Multimedia · Computer Science 2025-06-17 Parul Gupta , Shreya Ghosh , Tom Gedeon , Thanh-Toan Do , Abhinav Dhall

Estimating the Number of Distinct Values (NDV) is fundamental for numerous data management tasks, especially within database applications. However, most existing works primarily focus on introducing new statistical or learned estimators,…

A key obstacle in automated analytics and meta-learning is the inability to recognize when different datasets contain measurements of the same variable. Because provided attribute labels are often uninformative in practice, this task may be…

Machine Learning · Computer Science 2019-09-12 Jonas Mueller , Alex Smola

Low-mass objects are ubiquitous in our Galaxy. Their low temperature provides them with complex atmospheres characterised by the presence of strong molecular absorption bands which, together with their faintness, have made their accurate…

Solar and Stellar Astrophysics · Physics 2025-08-12 Pedro Mas-Buitrago

In the image classification task, the most common approach is to resize all images in a dataset to a unique shape, while reducing their precision to a size which facilitates experimentation at scale. This practice has benefits from a…

Computer Vision and Pattern Recognition · Computer Science 2021-05-21 Ferran Parés , Anna Arias-Duart , Dario Garcia-Gasulla , Gema Campo-Francés , Nina Viladrich , Eduard Ayguadé , Jesús Labarta

Dataset distillation compresses large training sets into compact synthetic datasets while preserving downstream performance. As modern systems increasingly operate on paired vision-language inputs, multimodal distillation must preserve…

Computer Vision and Pattern Recognition · Computer Science 2026-05-25 Jongoh Jeong , Hoyong Kwon , Minseok Kim , Kuk-Jin Yoon

We present AngstromPro, a versatile, modular and open-source software built on Python for managing, visualizing and analyzing large datasets acquired via Scanning Tunneling Microscopes (STM). Its robust architecture features a top-level…

Superconductivity · Physics 2026-04-22 Huiyu Zhao , Jiahao Yan , Catherine Dawson , Haitao Yang , Hong-Jun Gao

The success of deep learning in visual recognition tasks has driven advancements in multiple fields of research. Particularly, increasing attention has been drawn towards its application in agriculture. Nevertheless, while visual pattern…

Large medical imaging data sets are becoming increasingly available, but ensuring sample quality without significant artefacts is challenging. Existing methods for identifying imperfections in medical imaging rely on data-intensive…

Image and Video Processing · Electrical Eng. & Systems 2023-11-15 Daniele Ravi , Frederik Barkhof , Daniel C. Alexander , Lemuel Puglisi , Geoffrey JM Parker , Arman Eshaghi

Gene-gene interactions play a crucial role in the manifestation of complex human diseases. Uncovering significant gene-gene interactions is a challenging task. Here, we present an innovative approach utilizing data-driven computational…

Artificial Intelligence · Computer Science 2024-10-22 Yifan Wu , Yuntao Yang , Zirui Liu , Zhao Li , Khushbu Pahwa , Rongbin Li , Wenjin Zheng , Xia Hu , Zhaozhuo Xu

Proteomics will celebrate its 20th year in 2014. In this relatively short period of time, it has invaded most areas of biology and its use will probably continue to spread in the future. These two decades have seen a considerable increase…

Genomics · Quantitative Biology 2014-03-24 Thierry Rabilloud , Pierre Lescuyer

Influenced by the complexity of volumetric imaging, there is a shortage of established datasets useful for benchmarking volumetric deep-learning models. As a consequence, new and existing models are not easily comparable, limiting the…