Related papers: Representing distance-hereditary graphs with multi…
We give a precise description of combed trees in terms of Kelly-Mac Lane graphs. We show that any combed tree is uniquely expressed as an allowable Kelly-Mac Lane graph of a certain shape. Conversely, we show that any such Kelly-Mac Lane…
We consider the class of graphs for which the edge connectivity is equal to the maximum number of edge-disjoint spanning trees, and the natural generalization to matroids, where the cogirth is equal to the number of disjoint bases. We…
Transductions are a general formalism for expressing transformations of graphs (and more generally, of relational structures) in logic. We prove that a graph class $\mathscr{C}$ can be $\mathsf{FO}$-transduced from a class of bounded-height…
Chain graphs combine directed and undirected graphs and their underlying mathematics combines properties of the two. This paper gives a simplified definition of chain graphs based on a hierarchical combination of Bayesian (directed) and…
The transmission of a vertex in a connected graph is the sum of distances from that vertex to all the other vertices. A connected graph is transmission irregular if any two distinct vertices have different transmissions. We present an…
Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…
A circle graph is an intersection graph of a set of chords of a circle. We describe the unavoidable induced subgraphs of circle graphs with large treewidth. This includes examples that are far from the `usual suspects'. Our results imply…
A normal network is uniquely determined by the set of phylogenetic trees that it displays. Given a set $\mathcal{P}$ of rooted binary phylogenetic trees, this paper presents a polynomial-time algorithm that reconstructs the unique binary…
Constructions of directed configuration graphs based on a given bi-degree distribution were introduced in random graph theory some years ago. These constructions lead to graphs where the degrees of two nodes belonging to the same edge are…
While the notion of arboricity of a graph is well-known in graph theory, very few results are dedicated to the minimal number of trees covering the edges of a graph, called the tree number of a graph.
The transmission of a vertex $v$ of a graph $G$ is the sum of distances from $v$ to all the other vertices in $G$. A graph is transmission irregular if all of its vertices have pairwise different transmissions. A starlike tree…
The displayed tree phylogenetic network model is shown to sit as a natural submodel of the graphical model associated to a directed acyclic graph (DAG). This representation allows to derive a number of results about the displayed tree…
Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…
In this paper we consider the directed path-width and directed tree-width of recursively defined digraphs. As an important combinatorial tool, we show how the directed path-width and the directed tree-width can be computed for the disjoint…
Tree-width is an invaluable tool for computational problems on graphs. But often one would like to compute on other kinds of objects (e.g. decorated graphs or even algebraic structures) where there is no known tree-width analogue. Here we…
A double-arborescence is a treelike comparability graph with an all-adjacent vertex. In this paper, we first give a forbidden induced subgraph characterization of double-arborescences, where we prove that double-arborescences are precisely…
A binary phylogenetic network may or may not be obtainable from a tree by the addition of directed edges (arcs) between tree arcs. Here, we establish a precise and easily tested criterion (based on `2-SAT') that efficiently determines…
Distance-hereditary graphs form an important class of graphs, from the theoretical point of view, due to the fact that they are the totally decomposable graphs for the split-decomposition. The previous best enumerative result for these…
A class $\mathcal{G}$ of graphs is called hereditary if it is closed under taking induced subgraphs. We denote by $\mathcal{G}^\mathrm{apex}$ the class of graphs $G$ that contain a vertex $v$ such that $G-v$ is in $\mathcal{G}$. We prove…
For a graph G, the generating function of rooted forests, counted by the number of connected components, can be expressed in terms of the eigenvalues of the graph Laplacian. We generalize this result from graphs to cell complexes of…