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Foundation models (FMs) are catalyzing a transformative shift in materials science (MatSci) by enabling scalable, general-purpose, and multimodal AI systems for scientific discovery. Unlike traditional machine learning models, which are…

Machine Learning · Computer Science 2025-06-27 Minh-Hao Van , Prateek Verma , Chen Zhao , Xintao Wu

Object detection, segmentation and classification are three common tasks in medical image analysis. Multi-task deep learning (MTL) tackles these three tasks jointly, which provides several advantages saving computing time and resources and…

Computer Vision and Pattern Recognition · Computer Science 2019-06-06 Fei Gao , Hyunsoo Yoon , Teresa Wu , Xianghua Chu

Ontology learning in complex domains, such as life sciences, poses significant challenges for current Large Language Models (LLMs). Existing LLMs struggle to generate ontologies with multiple hierarchical levels, rich interconnections, and…

Artificial Intelligence · Computer Science 2024-12-04 Nadeen Fathallah , Steffen Staab , Alsayed Algergawy

Designing effective data manipulation methods is a long standing problem in data lakes. Traditional methods, which rely on rules or machine learning models, require extensive human efforts on training data collection and tuning models.…

Artificial Intelligence · Computer Science 2024-05-13 Yichen Qian , Yongyi He , Rong Zhu , Jintao Huang , Zhijian Ma , Haibin Wang , Yaohua Wang , Xiuyu Sun , Defu Lian , Bolin Ding , Jingren Zhou

In the genome biology research, regulatory genome modeling is an important topic for many regulatory downstream tasks, such as promoter classification, transaction factor binding sites prediction. The core problem is to model how regulatory…

Genomics · Quantitative Biology 2021-11-04 Shentong Mo , Xi Fu , Chenyang Hong , Yizhen Chen , Yuxuan Zheng , Xiangru Tang , Zhiqiang Shen , Eric P Xing , Yanyan Lan

Recent advances in Omni models have enabled unified multimodal perception and generation. However, most existing systems still exhibit rigid reasoning behaviors, either overthinking simple problems or failing to reason when necessary. To…

Artificial Intelligence · Computer Science 2025-12-05 Dongchao Yang , Songxiang Liu , Disong Wang , Yuanyuan Wang , Guanglu Wan , Helen Meng

Medical multi-modal pre-training has revealed promise in computer-aided diagnosis by leveraging large-scale unlabeled datasets. However, existing methods based on masked autoencoders mainly rely on data-level reconstruction tasks, but lack…

Computer Vision and Pattern Recognition · Computer Science 2024-04-10 Yupei Zhang , Li Pan , Qiushi Yang , Tan Li , Zhen Chen

The interactions between DNA, RNA, and proteins are fundamental to biological processes, as illustrated by the central dogma of molecular biology. Although modern biological pre-trained models have achieved great success in analyzing these…

Machine Learning · Computer Science 2025-12-02 Zicheng Liu , Siyuan Li , Zhiyuan Chen , Chang Yu , Qirong Yang , Yucheng Guo , Yujie Yang , Xiaoming Zhang , Stan Z. Li

We present Omni-I2C, a comprehensive benchmark designed to evaluate the capability of Large Multimodal Models (LMMs) in converting complex, structured digital graphics into executable code. We argue that this task represents a non-trivial…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Jiawei Zhou , Chi Zhang , Xiang Feng , Qiming Zhang , Haibo Qiu , Lihuo He , Dengpan Ye , Xinbo Gao , Jing Zhang

With the productive evolution of large language models (LLMs) in the field of natural language processing (NLP), tons of effort has been made to effectively fine-tune common pre-trained LLMs to fulfill a variety of tasks in one or multiple…

Computation and Language · Computer Science 2024-02-06 Chao Song , Zhihao Ye , Qiqiang Lin , Qiuying Peng , Jun Wang

Large Multi-modal Models (LMMs) have made impressive progress in many vision-language tasks. Nevertheless, the performance of general LMMs in specific domains is still far from satisfactory. This paper proposes FoodLMM, a versatile food…

Computer Vision and Pattern Recognition · Computer Science 2024-04-15 Yuehao Yin , Huiyan Qi , Bin Zhu , Jingjing Chen , Yu-Gang Jiang , Chong-Wah Ngo

Large Language Models (LLMs) have demonstrated remarkable performance across various natural language tasks, marking significant strides towards general artificial intelligence. While general artificial intelligence is leveraged by…

Computation and Language · Computer Science 2023-10-31 Yizhe Yang , Huashan Sun , Jiawei Li , Runheng Liu , Yinghao Li , Yuhang Liu , Heyan Huang , Yang Gao

Task load detection is essential for optimizing human performance across diverse applications, yet current models often lack generalizability beyond narrow experimental domains. While prior research has focused on individual tasks and…

Machine Learning · Computer Science 2025-09-03 Maximilian P. Oppelt , Andreas Foltyn , Nadine R. Lang-Richter , Bjoern M. Eskofier

Despite recent progress in time-series foundation models, challenges persist in improving representation learning and adapting to diverse downstream tasks. We introduce a General Time-series Model (GTM), which advances representation…

Machine Learning · Computer Science 2026-03-13 Cheng He , Xu Huang , Gangwei Jiang , Zhaoyi Li , Defu Lian , Hong Xie , Enhong Chen , Xijie Liang , Zengrong Zheng , Patrick P. C. Lee

Radiological analysis increasingly benefits from pretrained visual representations that can support heterogeneous downstream tasks across imaging modalities. In this work, we introduce OmniRad, a self-supervised radiological foundation…

Computer Vision and Pattern Recognition · Computer Science 2026-02-05 Luca Zedda , Andrea Loddo , Cecilia Di Ruberto

Designing a 6G-oriented universal model capable of processing multi-modal data and executing diverse air interface tasks has emerged as a common goal in future wireless systems. Building on our prior work in communication multi-modal…

Machine Learning · Computer Science 2025-05-16 Tianyu Jiao , Zhuoran Xiao , Yihang Huang , Chenhui Ye , Yijia Feng , Liyu Cai , Jiang Chang , Fangkun Liu , Yin Xu , Dazhi He , Yunfeng Guan , Wenjun Zhang

Large Language models (LLMs) have emerged as powerful tools for addressing challenges across diverse domains. Notably, recent studies have demonstrated that large language models significantly enhance the efficiency of biomolecular analysis…

Computation and Language · Computer Science 2025-03-07 Jiyue Jiang , Zikang Wang , Yuheng Shan , Heyan Chai , Jiayi Li , Zixian Ma , Xinrui Zhang , Yu Li

Foundation models are multi-dataset and multi-task machine learning methods that once pre-trained can be fine-tuned for a large variety of downstream applications. The successful development of such general-purpose models for physics data…

High Energy Physics - Phenomenology · Physics 2024-09-10 Joschka Birk , Anna Hallin , Gregor Kasieczka

Multimodal LLMs (MLLMs) are capable of performing complex data analysis, visual question answering, generation, and reasoning tasks. However, their ability to analyze biometric data is relatively underexplored. In this work, we investigate…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Ekta Gavas , Sudipta Banerjee , Chinmay Hegde , Nasir Memon

Transparency-aware generation requires modeling not only RGB appearance but also alpha-based opacity and cross-layer composition, which are essential for tasks such as image matting, object removal, layer decomposition, and multi-layer…

Computer Vision and Pattern Recognition · Computer Science 2026-04-29 Hao Yu , Jinglin Wang , Jiabo Zhan , Rui Chen , Zile Wang , Huaisong Zhang , Hongyu Li , Xinrui Chen , Yongxian Wei , Chun Yuan