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The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Structural clustering is one of the most popular graph clustering methods, which has achieved great performance improvement by utilizing GPUs. Even though, the state-of-the-art GPU-based structural clustering algorithm, GPUSCAN, still…

Databases · Computer Science 2023-12-01 Long Yuan , Zeyu Zhou , Xuemin Lin , Zi Chen , Xiang Zhao , Fan Zhang

Convex clustering is an attractive clustering algorithm with favorable properties such as efficiency and optimality owing to its convex formulation. It is thought to generalize both k-means clustering and agglomerative clustering. However,…

Machine Learning · Statistics 2021-05-19 Canh Hao Nguyen , Hiroshi Mamitsuka

Convex clustering is a promising new approach to the classical problem of clustering, combining strong performance in empirical studies with rigorous theoretical foundations. Despite these advantages, convex clustering has not been widely…

Machine Learning · Statistics 2021-11-03 Michael Weylandt , John Nagorski , Genevera I. Allen

Fast accumulation of large amounts of complex data has created a need for more sophisticated statistical methodologies to discover interesting patterns and better extract information from these data. The large scale of the data often…

Methodology · Statistics 2014-09-09 Yuliya Marchetti , Qing Zhou

Convex clustering is a modern clustering framework that guarantees globally optimal solutions and performs comparably to other advanced clustering methods. However, obtaining a complete dendrogram (clusterpath) for large-scale datasets…

Machine Learning · Computer Science 2025-04-01 Bingyuan Zhang , Yoshikazu Terada

Convex clustering is a recent stable alternative to hierarchical clustering. It formulates the recovery of progressively coalescing clusters as a regularized convex problem. While convex clustering was originally designed for handling…

Applications · Statistics 2019-12-12 Claire Donnat , Susan Holmes

Combinatorial optimization problems for clustering are known to be NP-hard. Most optimization methods are not able to find the global optimum solution for all datasets. To solve this problem, we propose a global optimal path-based…

Machine Learning · Computer Science 2019-09-18 Qidong Liu , Ruisheng Zhang

We scrutinize how to accelerate the bottleneck operations of Pythonic coupled cluster implementations performed on a \texttt{NVIDIA} Tesla V100S PCIe 32GB (rev 1a) Graphics Processing Unit (GPU). The \texttt{NVIDIA} Compute Unified Device…

Convex clustering, a convex relaxation of k-means clustering and hierarchical clustering, has drawn recent attentions since it nicely addresses the instability issue of traditional nonconvex clustering methods. Although its computational…

Methodology · Statistics 2019-01-01 Binhuan Wang , Yilong Zhang , Will Wei Sun , Yixin Fang

In this work, we introduce new batching algorithms to effectively handle large contractions encountered in coupled-cluster singles and doubles (CCSD) implementations in Python on the Video Random Access Memory (VRAM) of graphical processing…

Consensus clustering (or clustering aggregation) inputs $k$ partitions of a given ground set $V$, and seeks to create a single partition that minimizes disagreement with all input partitions. State-of-the-art algorithms for consensus…

Data Structures and Algorithms · Computer Science 2023-07-11 Nathan Cordner , George Kollios

Clustering is a NP-hard problem. Thus, no optimal algorithm exists, heuristics are applied to cluster the data. Heuristics can be very resource-intensive, if not applied properly. For substantially large data sets computational efficiencies…

Databases · Computer Science 2020-03-11 Mujahid Sultan

The convex hull is a fundamental geometrical structure for many applications where groups of points must be enclosed or represented by a convex polygon. Although efficient sequential convex hull algorithms exist, and are constantly being…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-27 Alan Keith , Héctor Ferrada , Cristóbal A. Navarro

We introduce a GPU-accelerated Monte Carlo framework for nonconvex, free-final-time trajectory optimization problems. This framework makes use of the prox-linear method, which belongs to the larger family of sequential convex programming…

Optimization and Control · Mathematics 2024-04-30 Govind M. Chari , Abhinav G. Kamath , Purnanand Elango , Behçet Açıkmeşe

Cluster resource allocation is a multidimensional search problem that finds the best allocation of tasks to servers. Because the search space grows exponentially, modern approaches frame it as a mixed integer program (MIP) or a complex set…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-05 Obi Nnorom , Stephen Boyd , Philip Levis

partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's…

Computational Physics · Physics 2021-11-22 Joris Paret , Daniele Coslovich

Graph-based clustering methods have demonstrated the effectiveness in various applications. Generally, existing graph-based clustering methods first construct a graph to represent the input data and then partition it to generate the…

Machine Learning · Computer Science 2019-12-17 Yuheng Jia , Hui Liu , Junhui Hou , Sam Kwong

Clustering is a popular unsupervised learning tool often used to discover groups within a larger population such as customer segments, or patient subtypes. However, despite its use as a tool for subgroup discovery and description - few…

Machine Learning · Computer Science 2021-12-13 Connor Lawless , Jayant Kalagnanam , Lam M. Nguyen , Dzung Phan , Chandra Reddy

This survey reviews a clustering method based on solving a convex optimization problem. Despite the plethora of existing clustering methods, convex clustering has several uncommon features that distinguish it from prior art. The…

Methodology · Statistics 2025-09-19 Eric C. Chi , Aaron J. Molstad , Zheming Gao , Jocelyn T. Chi
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