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The motility of a cell can be triggered or inhibited not only by an applied force but also by a mechanically neutral force couple. This type of loading, represented by an applied stress and commonly interpreted as either squeezing or…

Soft Condensed Matter · Physics 2018-01-24 Thibaut Putelat , Pierre Recho , Lev Truskinovsky

Building upon our previous work on the Wilson-Cowan equations with distributed delays, we study the dynamic behavior in a system of two coupled Wilson-Cowan pairs. We focus in particular on understanding the mechanisms that govern the…

Dynamical Systems · Mathematics 2023-07-14 Eva Kaslik , Emanuel-Attila Kokovics , Anca Radulescu

Cellular automata represent physical systems where both space and time are discrete, and the associated physical quantities assume a limited set of values. While previous research has applied cellular automata in modeling chemical,…

Cellular Automata and Lattice Gases · Physics 2024-10-30 Temitayo Adefemi

We describe a scheme with analytic result that allows to generate steady-state entanglement for two atoms over a dissipative bosonic medium. The resonant coupling between the mediating bosonic mode and cavity modes produces three collective…

Quantum Physics · Physics 2014-11-18 Li-Tuo Shen , Xin-Yu Chen , Zhen-Biao Yang , Huai-Zhi Wu , Shi-Biao Zheng

The appealing feature of molecular electronics is the possibility of exploiting functionality built within a single molecule. This functionality can be employed, for example, for sensing or switching purposes. Thus, ideally, the associated…

We present results of molecular dynamics simulations for two-dimensional repulsively interacting colloids driven by a one dimensional asymmetric and commensurate ratchet potential, switching on and off stochastically. This drives a…

Soft Condensed Matter · Physics 2018-05-17 Dipanjan Chakraborty , Debasish Chaudhuri

We first argue that the covalent bond and the various closed-shell interactions can be thought of as symmetry broken versions of one and the same interaction, viz., the multi-center bond. We use specially chosen molecular units to show that…

Strongly Correlated Electrons · Physics 2017-06-16 Jon C. Golden , Vinh Ho , Vassiliy Lubchenko

Metamaterials are artificial composite structures designed for controlling waves or fields, and exhibit interaction phenomena that are unexpected on the basis of their chemical constituents. These phenomena are encoded in effective material…

Materials Science · Physics 2015-12-21 Mihai Caleap , Bruce W Drinkwater

Quantum mechanics allows for situations where the relative order between two processes is entangled with a quantum degree of freedom. Here we show that such entanglement can enhance the ability to transmit quantum information over noisy…

Quantum Physics · Physics 2018-09-20 Sina Salek , Daniel Ebler , Giulio Chiribella

Microorganisms can preferentially orient and move along gradients of a chemo-attractant (i.e., chemotax) while colonies of many microorganisms can collectively undergo complex dynamics in response to chemo-attractants that they themselves…

Biological Physics · Physics 2013-10-30 Enkeleida Lushi , Raymond E. Goldstein , Michael J. Shelley

Chemo-mechanical waves on active deformable surfaces are a key component for many vital cellular functions. In particular, these waves play a major role in force generation and long-range signal transmission in cells that dynamically change…

Artificial molecules containing just one or two electrons provide a powerful platform for studies of orbital and spin quantum dynamics in nanoscale devices. A well-known example of these dynamics is tunneling of electrons between two…

Mixed ionic-electronic conductors host tightly coupled interactions among mobile ions, electronic charges, and the polymer matrix, giving rise to complex multimodal responses spanning electrical, mechanical, and morphological…

We formulate general rules for a coarse-graining of the dynamics, which we term `symbolic dynamics', of feedback networks with monotone interactions, such as most biological modules. Networks which are more complex than simple cyclic…

Quantitative Methods · Quantitative Biology 2009-03-04 Simone Pigolotti , Sandeep Krishna , Mogens H. Jensen

We theoretically investigate the flow of the atomic excitations in a driven chiral-coupled atomic chain with nonreciprocal decay channels. This one-dimensional system allows infinite-range dipole-dipole interaction, and enables directional…

Quantum Physics · Physics 2019-03-06 H. H. Jen

Active particles contain internal degrees of freedom with the ability to take in and dissipate energy and, in the process, execute systematic movement. Examples include all living organisms and their motile constituents such as molecular…

Soft Condensed Matter · Physics 2015-05-18 Sriram Ramaswamy

Predicting structural and energetic properties of a molecular system is one of the fundamental tasks in molecular simulations, and it has use cases in chemistry, biology, and medicine. In the past decade, the advent of machine learning…

Chemical Physics · Physics 2022-08-23 Sajjad Heydari , Stefano Raniolo , Lorenzo Livi , Vittorio Limongelli

Biochemical networks can respond to temporal characteristics of time-varying signals. To understand how reliably biochemical networks can transmit information we must consider how an input signal as a function of time--the input…

Molecular Networks · Quantitative Biology 2015-05-13 Filipe Tostevin , Pieter Rein ten Wolde

Solitons - localized wave packets that travel without spreading - play a central role in understanding transport and properties of nonlinear systems, from optical fibers to fluid dynamics. In quantum many-body systems, however, such robust…

Quantum Physics · Physics 2025-07-18 Aron Kerschbaumer , Jean-Yves Desaules , Marko Ljubotina , Maksym Serbyn

Simulations can help unravel the complicated ways in which molecular structure determines function. Here, we use molecular simulations to show how slight alterations of a molecular motor's structure can cause the motor's typical dynamical…

Statistical Mechanics · Physics 2023-08-21 Alex Albaugh , Geyao Gu , Todd R. Gingrich