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Currently, biological signaling is envisaged as a combination of activation and movement, triggered by local molecular interactions and molecular diffusion, respectively. However, we here suggest, that other fundamental physical mechanisms…

Biological Physics · Physics 2018-05-22 B. Fichtl , I. Silman , M. F. Schneider

Continuous-time systems with switch-like behaviour occur in chemical kinetics, gene regulatory networks and neural networks. Networks with hard switching, as a limiting case of smooth sigmoidal switching, retain the richest possible range…

Dynamical Systems · Mathematics 2019-05-10 Roderick Edwards

The transport and chemical reactions of solutes are modelled as a cellular automaton in which molecules of different species perform a random walk on a regular lattice and react according to a local probabilistic rule. The model describes…

comp-gas · Physics 2009-10-22 T. Karapiperis , B. Blankleider

Understanding the out-of-equilibrium properties of noisy microscale systems and the extent to which they can be modulated externally, is a crucial scientific and technological challenge. It holds the promise to unlock disruptive new…

Soft Condensed Matter · Physics 2022-09-21 Stephen Williams , Raphaël Jeanneret , Idan Tuval , Marco Polin

Active materials are capable of converting free energy into mechanical work to produce autonomous motion, and exhibit striking collective dynamics that biology relies on for essential functions. Controlling those dynamics and transport in…

Topological phenomena typically govern the behavior of delocalized waves, giving rise to robust transport in electronic, photonic, and mechanical systems. Whether similar principles can directly control the motion of a localized particle,…

Fluid Dynamics · Physics 2026-03-13 Ethan Andersson , Valeri Frumkin

Chemical reactions are a prominent feature of molecular communication (MC) systems, with no direct parallels in wireless communications. While chemical reactions may be used inside the transmitter nodes, receiver nodes or the communication…

Information Theory · Computer Science 2018-04-25 Maryam Farahnak-Ghazani , Gholamali Aminian , Mahtab Mirmohseni , Amin Gohari , Masoumeh Nasiri-Kenari

Driven granular media constitute model systems in out-of-equilibrium statistical physics. By assimilating the motions of granular particles to those of atoms, by analogy, one can obtain macroscopic equivalent of phase transitions. Here, we…

Soft Condensed Matter · Physics 2022-06-29 Michael Berhanu , Simon Merminod , Gustavo Castillo , Eric Falcon

Processive molecular motors which drive the traffic of organelles in cells move in a directed way along cytoskeletal filaments. On large time scales, they perform motor walks, i.e., peculiar random walks which arise from the repeated…

Statistical Mechanics · Physics 2007-05-23 Stefan Klumpp , Theo M. Nieuwenhuizen , Reinhard Lipowsky

We consider a continuous atom laser propagating through a wave guide with a constriction. Two different types of transmitted stationary flow coexist. The first one coincides, at low incident current, with the non-interacting flow. As the…

Condensed Matter · Physics 2009-11-10 Patricio Leboeuf , Nicolas Pavloff , Subhasis Sinha

Understanding how molecular machines transduce mechanical force into chemical signals is a central goal in chemistry. The mechanosensitive ion channel Piezo1 is an archetypal nanoscale mechanotransducer, but the molecular principles by…

Molecular Networks · Quantitative Biology 2025-12-22 Yuling Zhang , Lei Kang , Yancong Zhang , Guohui Hu

The harmonic oscillator is one of the simplest physical systems but also one of the most fundamental. It is ubiquitous in nature, often serving as an approximation for a more complicated system or as a building block in larger models.…

Quantum Physics · Physics 2011-11-15 K. R. Brown , C. Ospelkaus , Y. Colombe , A. C. Wilson , D. Leibfried , D. J. Wineland

Cell migration is a fundamental process involved in physiological phenomena such as the immune response and morphogenesis, but also in pathological processes, such as the development of tumor metastasis. These functions are effectively…

Cell Behavior · Quantitative Biology 2018-12-26 Christèle Etchegaray , Nicolas Meunier

This paper attempts to review our studies on the propagation of signals in nerves over the past decade. The need for interdisciplinary studies is stressed that helps to understand the physical mechanisms of coupling the electrical,…

Biological Physics · Physics 2024-12-24 Jüri Engelbrecht , Kert Tamm , Tanel Peets

Strongly correlated physics arises from electron-electron scattering within partially filled orbitals. Organic molecules in open-shell configurations are therefore good candidates to exhibit many-body effects. We focus on electron transport…

Strongly Correlated Electrons · Physics 2025-11-14 G. Gandus , A. Jayaraj , D. Passerone , R. Stadler , M. Luisier , A. Valli

Complex systems often have features that can be modeled by advanced mathematical tools [1]. Of special interests are the features of complex systems that have a network structure as such systems are important for modeling technological and…

Classical Physics · Physics 2019-06-13 Nikolay K. Vitanov , Kaloyan N. Vitanov , Zlatinka I. Dimitrova

Phase separation into compositionally and physically distinct domains is ubiquitous in (non)living matter ranging from alloys and emulsions to biomolecular condensates in cells. The organization of these domains can be controlled, for…

Soft Condensed Matter · Physics 2026-03-31 Andriy Goychuk

The propagation of an action potential is accompanied by mechanical and thermal effects. Several mathematical models explain the deformation of the unmyelinated axon wall. In this paper, the deformation of the myelinated axon wall is…

Biological Physics · Physics 2022-06-28 Kert Tamm , Tanel Peets , Jüri Engelbrecht

Different types of synchronization states are found when non-linear chemical oscillators are embedded into an active medium that interconnects the oscillators but also contributes to the system dynamics. Using different theoretical tools,…

Adaptation and Self-Organizing Systems · Physics 2021-03-09 David García-Selfa , Gourab Ghoshal , Christian Bick , Juan Pérez-Mercader , Alberto P. Muñuzuri

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta
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