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Proliferating cell collectives often develop an active growth layer near their boundary that regulates expansion and morphology, as observed in systems ranging from bacterial biofilms to epithelial tissues and tumor spheroids. While such…

Soft Condensed Matter · Physics 2026-04-27 Fidel Álvarez-Murphy , Ignacio Medina , Néstor Sepúlveda , Gustavo Düring

Activity and renewability are distinctive features of living matter, and constitute a new class of materials that we term renewable active matter. A striking example is the cell cytoskeleton, where myosin filaments bind to the actin…

Soft Condensed Matter · Physics 2025-05-27 M. Abhishek , Ankit Dhanuka , Deb Sankar Banerjee , Madan Rao

We have studied the approach to equilibrium of islands and pores in two dimensions. The two-regime scenario observed when islands evolve according to a set of particular rules, namely relaxation by steps at low temperature and smooth at…

Materials Science · Physics 2009-11-10 Jose L. Iguain , Laurent J. Lewis

Turing instabilities for a two species reaction-diffusion systems is studied under anisotropic diffusion. More specifically, the diffusion constants which characterize the ability of the species to relocate in space are direction sensitive.…

Statistical Mechanics · Physics 2015-09-30 Daniel M. Busiello , Gwendoline Planchon , Malbor Asllani , Timoteo Carletti , Duccio Fanelli

The term active matter describes diverse systems, spanning macroscopic (e.g. shoals of fish and flocks of birds) to microscopic scales (e.g. migrating cells, motile bacteria and gels formed through the interaction of nanoscale molecular…

Soft Condensed Matter · Physics 2010-03-11 Gautam I. Menon

Via molecular dynamics simulations, we study the kinetics in a phase separating active matter model. Quantitative results for the isotropic bicontinuous pattern formation, its growth and aging, studied, respectively, via the two-point…

Soft Condensed Matter · Physics 2016-05-27 Subir K. Das

Understanding systems level behaviour of many interacting agents is challenging in various ways, here we'll focus on the how the interaction between components can lead to hierarchical structures with different types of dynamics, or…

Populations and Evolution · Quantitative Biology 2018-12-26 Henrik Jeldtoft Jensen

Ocean acidification is a threat to deep-sea corals and could lead to dramatic and rapid loss of the reef framework habitat they build. Weakening of structurally critical parts of the coral reef framework can lead to physical habitat…

We report measurements of the evolution of lines, planes, and volumes in an intensely turbulent laboratory flow using high-speed particle tracking. We find that the classical characteristic time scale of an eddy at the initial scale of the…

Fluid Dynamics · Physics 2009-11-13 Haitao Xu , Nicholas T. Ouellette , Eberhard Bodenschatz

We study pattern formation in a chemotaxis model of bacteria and soil carbon dynamics as an example system where transient dynamics can give rise to pattern formation outside of Turing unstable regimes. We use a detailed analysis of the…

Models based on surfactant driven instabilities have been employed to describe pattern formation by swarming bacteria. However, by definition, such models cannot account for the effect of bacterial sensing and decision making. Here we…

We classify and predict the asymptotic dynamics of a class of swarming models. The model consists of a conservation equation in one dimension describing the movement of a population density field. The velocity is found by convolving the…

Populations and Evolution · Quantitative Biology 2015-05-13 A. J. Leverentz , C. M. Topaz , A. J. Bernoff

We propose an interacting lattice gas model of structural glass characterized by particle distinguishability and site-particle-dependent random nearest-neighboring particle interactions. This incorporates disorder quenched in the…

Statistical Mechanics · Physics 2017-05-24 Ling-Han Zhang , Chi-Hang Lam

A recent model of Ariel et al. [1] for explaining the observation of L\'evy walks in swarming bacteria suggests that self-propelled, elongated particles in a periodic array of regular vortices perform a super-diffusion that is consistent…

Chaotic Dynamics · Physics 2020-07-15 Gil Ariel , Jeremy Schiff

Excitable media are systems which are at rest in the absence of external input but which respond to a sufficiently strong stimulus by sending a wave of "excitation" across the medium. Examples include cardiac and cortical tissue, and in…

Quantitative Methods · Quantitative Biology 2021-01-01 S. P. Hastings , M. M Sussman

We present studies for an individual based model of three interacting populations whose individuals are mobile in a 2D-lattice. We focus on the pattern formation in the spatial distributions of the populations. Also relevant is the…

Populations and Evolution · Quantitative Biology 2007-12-18 I. C. Charret , M. V. Carneiro

We numerically examine a bidisperse system of active and passive particles coupled to a resource substrate. The active particles deplete the resource at a fixed rate and move toward regions with higher resources, while all of the particles…

Soft Condensed Matter · Physics 2024-04-23 L. Varga , A. Libal , C. Reichhardt , C. J. O. Reichhardt

Scientists investigate the dynamics of complex systems with quantitative models, employing them to synthesize knowledge, to explain observations, and to forecast future system behavior. Complete specification of systems is impossible, so…

Quantitative Methods · Quantitative Biology 2007-05-23 S. R. Borrett , W. Bridewell , P. Langely , K. R. Arrigo

Hot Jupiters are expected to form far from their host star and move toward close-in, circular orbits via a smooth, monotonic decay due to mild and constant tidal dissipation. Yet, three systems have recently been found exhibiting…

Earth and Planetary Astrophysics · Physics 2024-09-19 Jared Bryan , Julien de Wit , Meng Sun , Zoë L. de Beurs , Richard H. D. Townsend

In this paper, we report on the generation and propagation of traveling pulses in a homogeneous network of diffusively coupled, excitable, slow-fast dynamical neurons. The spatially extended system is modelled using the nearest neighbor…

Pattern Formation and Solitons · Physics 2024-06-19 Arnab Mondal , Argha Mondal , M. A. Aziz-Alaoui , Ranjit Kumar Upadhyay , Sanjeev Kumar Sharma , Chris G. Antonopoulos