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We study the static properties of a semiflexible polymer exposed to a quenched random environment by means of computer simulations. The polymer is modeled as two-dimensional Heisenberg chain. For the random environment we consider hard…

Soft Condensed Matter · Physics 2012-11-20 Sebastian Schoebl , Johannes Zierenberg , Wolfhard Janke

We consider the problem of deciding whether a polygonal knot in 3-dimensional Euclidean space is unknotted, capable of being continuously deformed without self-intersection so that it lies in a plane. We show that this problem, {\sc…

Geometric Topology · Mathematics 2007-05-23 Joel Hass , Jeffrey C. Lagarias , Nicholas Pippenger

Monte Carlo simulations are used to study the conformational behavior of a semiflexible polymer confined to cylindrical and conical channels. The channels are sufficiently narrow that the conditions for the Odijk regime are marginally…

Soft Condensed Matter · Physics 2020-12-02 James M. Polson , Cameron G. Hastie

We find a power law for the number of knot-monomers with an exponent $0.39 \pm0.13$ in agreement with previous simulations. For the average size of a knot we also obtain a power law $N_m=2.56\cdot N^{0.20\pm0.04}$. We further present data…

Soft Condensed Matter · Physics 2007-05-23 Michael Brill , Philipp M. Diesinger , Dieter W. Heermann

In this paper, we study a special family of $(1,1)$ knots called constrained knots, which includes 2-bridge knots in the 3-sphere $S^3$ and simple knots in lens spaces. Constrained knots are parameterized by five integers and characterized…

Geometric Topology · Mathematics 2023-06-14 Fan Ye

Let $K_0$ and $K$ be knots in $\mathbb{R}^3$. Suppose that by a compactly supported Hamiltonian isotopy on $T^*\mathbb{R}^3$, the conormal bundle of $K_0$ is isotopic to a Lagrangian submanifold which intersects the zero section cleanly…

Symplectic Geometry · Mathematics 2025-04-29 Yukihiro Okamoto

Using a combination of the replica-exchange Monte Carlo algorithm and the multicanonical method, we investigate the influence of bending stiffness on the conformational phases of a bead-stick homopolymer model and present the pseudo-phase…

Soft Condensed Matter · Physics 2016-03-30 Martin Marenz , Wolfhard Janke

We employ computer simulations and thermodynamic integration to analyse the effects of bending rigidity and slit confinement on the free energy cost of tying knots, $\Delta F_{\rm knotting}$, on polymer chains under tension. A…

Soft Condensed Matter · Physics 2014-05-15 Peter Poier , Christos N. Likos , Richard Matthews

In this paper, we propose new classes of trapdoor functions to solve the closest vector problem in lattices. Specifically, we construct lattices based on properties of polynomials for which the closest vector problem is hard to solve unless…

Cryptography and Security · Computer Science 2017-10-09 Zhe Li , San Ling , Chaoping Xing , Sze Ling Yeo

In this work the thermodynamic properties of short polymer knots (up to 120 segments) defined on a simple cubic lattice are studied with the help of the Wang-Landau Monte Carlo algorithm. The sampling process is performed using pivot…

Soft Condensed Matter · Physics 2015-06-16 Yani Zhao , Franco Ferrari

We consider the problem of an inextensible but flexible fiber advected by a steady chaotic flow, and ask the simple question whether the fiber can spontaneously knot itself. Using a 1D Cosserat model, a simple local viscous drag model and…

Soft Condensed Matter · Physics 2021-04-21 Benjamin Favier

In this paper we investigate the Alexander polynomial of (1,1)-knots, which are knots lying in a 3-manifold with genus one at most, admitting a particular decomposition. More precisely, we study the connections between the Alexander…

Geometric Topology · Mathematics 2007-05-23 Alessia Cattabriga

We give a new combinatorial proof for the number of convex polyominoes whose minimum enclosing rectangle has given dimensions. We also count the subclass of these polyominoes that contain the lower left corner of the enclosing rectangle…

Combinatorics · Mathematics 2019-03-05 Kevin Buchin , Man-Kwun Chiu , Stefan Felsner , Günter Rote , André Schulz

Simple closed curves in the plane can be mapped to nontrivial knots under the action of origami foldings that allow the paper to self-intersect. We show all tame knot types may be produced in this manner, motivating the development of a new…

Geometric Topology · Mathematics 2021-05-05 Joseph Slote , Thomas Bertschinger

We study the problem of folding of the regular triangular lattice in the presence of a quenched random bending rigidity + or - K and a magnetic field h (conjugate to the local normal vectors to the triangles). The randomness in the bending…

Condensed Matter · Physics 2007-05-23 P. Di Francesco , E. Guitter , S. Mori

Given a knot K in an Euclidean space E and a finite dimensional space V of smooth functions on K, we express the expected number of critical points of a random function in V in terms of an integral-geometric invariant of K and V. When V…

Differential Geometry · Mathematics 2010-06-09 Liviu I. Nicolaescu

We introduce a numerical invariant \beta(K) of a knot K which measures how non-alternating K is. We prove an inequality between \beta (K) and the (knot Floer) thickness of K. As an application we show that all Montesinos knots have…

Geometric Topology · Mathematics 2022-11-02 Andras I. Stipsicz , Zoltan Szabo

Given a (genus 2) cube-with-holes M, i.e. the complement in S^3 of a handlebody H, we relate intrinsic properties of M (like its cut number) with extrinsic features depending on the way the handlebody H is knotted in S^3. Starting from a…

Geometric Topology · Mathematics 2015-03-17 Riccardo Benedetti , Roberto Frigerio

We discuss the possibility of the existence of finite algorithms that may give distinct knot classes. In particular we present two attempts for such algorithms which seem promising, one based on knot projections on a plane, the other on…

High Energy Physics - Theory · Physics 2008-02-03 Charilaos Aneziris

We show that the knot lattice homology of a knot in an L-space is equivalent to the knot Floer homology of the same knot (viewed these invariants as filtered chain complexes over the polynomial ring Z/2Z [U]). Suppose that G is a negative…

Geometric Topology · Mathematics 2012-07-18 Peter Ozsváth , András Stipsicz , Zoltán Szabó