Related papers: Stability analysis of solutions in the helicoidal …
As a first step in the search of an analytical study of mechanical denaturation of DNA in terms of the sequence, we study stable, stationary solutions in the discrete, finite and homogeneous Peyrard-Bishop DNA model. We find and classify…
The damping effect to the DNA bubble is investigated within the Peyrard-Bishop model. In the continuum limit, the dynamics of the bubble of DNA is described by the damped nonlinear Schrodinger equation and studied by means of variational…
A couple of models are explained. Helicoidal PB model is studied in more details. It is shown that semi-discrete approximation yields to breather-type soliton moving along the chain. The model can explain local opening as a resonance mode.…
In the present paper we study the impact of dispersion and nonlinearity on DNA dynamics. We rely on the helicoidal Peyrard-Bishop model and use the fact that nonlinear DNA dynamics represents an interplay between nonlinearity and…
This paper aims at investigating the existence of localized stationary waves in the shallow subsurface whose constitutive behaviour is governed by the hyperbolic model, implying non-polynomial nonlinearity and strain-dependent shear…
To show that steadily propagating nonlinear waves in active matter can be driven internally, we develop a prototypical model of a topological kink moving with a constant supersonic speed. We use a model of a bi-stable mass-spring (FPU)…
We study by a combination of numerical and analytical Evans function techniques the stability of solitary wave solutions of the St. Venant equations for viscous shallow-water flow down an incline, and related models. Our main result is to…
We investigate the nonlinear dynamics of the Peyrard-Bishop DNA model taking into account site dependent inhomogeneities. By means of the multiple-scale expansion in the semi-discrete approximation, the dynamics is governed by the perturbed…
We here examine the nonlinear dynamics of artificial homogeneous DNA chain relying on the plain-base rotator model. It is shown that such dynamics can exhibit kink and antikink solitons of sine-Gordon type. In that respect we propose…
We give a geometric proof of spectral stability of travelling kink wave solutions to the sine-Gordon equation. For a travelling kink wave solution of speed $c \neq \pm 1$, the wave is spectrally stable. The proof uses the Maslov index as a…
This work studies a stabilization technique for first-order hyperbolic differential equations used in DNA transcription modeling. Specifically we use the Lighthill-Whitham-Richards Model with a nonlinear Greenshield's velocity proposed in…
We present a stability theory for kink propagation in chains of coupled oscillators and a new algorithm for the numerical study of kink dynamics. The numerical solutions are computed using an equivalent integral equation instead of a system…
We study the stability/instability of the subsonic travelling waves of the Nonlinear Schr\"odinger Equation in dimension one. Our aim is to propose several methods for showing instability (use of the Grillakis-Shatah-Strauss theory, proof…
The aim of this work is to establish a linear instability result of stationary, kink and kink/anti-kink soliton profile solutions for the sine-Gordon equation on a metric graph with a structure represented by a $\mathcal Y$-junction. The…
We are concerned with the dynamical behavior of solutions to semilinear wave systems with time-varying damping and nonconvex force potential. Our result shows that the dynamical behavior of solution is asymptotically stable without any…
The peridynamic model of a solid does not involve spatial gradients of the displacement field and is therefore well suited for studying defect propagation. Here, bond-based peridynamic theory is used to study the equilibrium and steady…
We investigate the nonlinear dynamics of a damped Peyrard-Bishop DNA model taking into account long-range interactions with distance dependence |l|^-s on the elastic coupling constant between different DNA base pairs. Considering both…
In this work we study the orbital stability/instability in the energy space of a specific family of periodic wave solutions of the general $\phi^{4n}$-model for all $n\in\mathbb{N}$. This family of periodic solutions are orbiting around the…
We derive an exact solitary wave solution for the $\PTb$-symmetric nonlinear Dirac equation with a scalar-scalar interaction. We consider a power-law nonlinearity of the form $|\bar{\Psi}\,\Psi|^{k}\,\Psi$ for positive values of $k$. The…
We study a semilinear hyperbolic system of PDEs which arises as a continuum approximation of the discrete nonlinear dimer array model introduced by Hadad, Vitelli and Alu (HVA) in \cite{HVA17}. We classify the system's traveling waves, and…