Related papers: Popcorn: Accelerating Kernel K-means on GPUs throu…
We propose k^2-means, a new clustering method which efficiently copes with large numbers of clusters and achieves low energy solutions. k^2-means builds upon the standard k-means (Lloyd's algorithm) and combines a new strategy to accelerate…
Kernel matrix-vector multiplication (KMVM) is a foundational operation in machine learning and scientific computing. However, as KMVM tends to scale quadratically in both memory and time, applications are often limited by these…
Due to its simplicity and versatility, k-means remains popular since it was proposed three decades ago. The performance of k-means has been enhanced from different perspectives over the years. Unfortunately, a good trade-off between quality…
Sparse Matrix Vector multiplication (SpMV) is one of basic building blocks in scientific computing, and acceleration of SpMV has been continuously required. In this research, we aim for accelerating SpMV on recent CPUs for sparse matrices…
We consider the problem of clustering a sample of probability distributions from a random distribution on $\mathbb R^p$. Our proposed partitioning method makes use of a symmetric, positive-definite kernel $k$ and its associated reproducing…
Background: Short sequence substrings of a fixed length k, called k-mers, are a ubiquitous computational primitive in bioinformatics, used across sequence indexing, read mapping, genome assembly, metagenomic classification, and comparative…
Among many clustering algorithms, the K-means clustering algorithm is widely used because of its simple algorithm and fast convergence. However, this algorithm suffers from incomplete data, where some samples have missed some of their…
$K$-means, a simple and effective clustering algorithm, is one of the most widely used algorithms in multimedia and computer vision community. Traditional $k$-means is an iterative algorithm---in each iteration new cluster centers are…
Coresets are compact representations of data sets such that models trained on a coreset are provably competitive with models trained on the full data set. As such, they have been successfully used to scale up clustering models to massive…
Sparse matrices, more specifically SpGEMM kernels, are commonly found in a wide range of applications, spanning graph-based path-finding to machine learning algorithms (e.g., neural networks). A particular challenge in implementing SpGEMM…
This paper introduces Geometric-k-means (or Gk-means for short), a novel approach that significantly enhances the efficiency and energy economy of the widely utilized k-means algorithm, which, despite its inception over five decades ago,…
We present methods for k-means clustering on a stream with a focus on providing fast responses to clustering queries. Compared to the current state-of-the-art, our methods provide substantial improvement in the query time for cluster…
Top-K SpMV is a key component of similarity-search on sparse embeddings. This sparse workload does not perform well on general-purpose NUMA systems that employ traditional caching strategies. Instead, modern FPGA accelerator cards have a…
In [SIAM J. Optim., 2022], the authors introduced a new linear programming (LP) relaxation for K-means clustering. In this paper, we further investigate both theoretical and computational properties of this relaxation. As evident from our…
Sparse-dense linear algebra is crucial in many domains, but challenging to handle efficiently on CPUs, GPUs, and accelerators alike; multiplications with sparse formats like CSR and CSF require indirect memory lookups. In this work, we…
In this paper, we propose an optimization selection methodology for the ubiquitous sparse matrix-vector multiplication (SpMV) kernel. We propose two models that attempt to identify the major performance bottleneck of the kernel for every…
The $k$-means algorithm is arguably the most popular nonparametric clustering method but cannot generally be applied to datasets with incomplete records. The usual practice then is to either impute missing values under an assumed…
We provide the first streaming algorithm for computing a provable approximation to the $k$-means of sparse Big data. Here, sparse Big Data is a set of $n$ vectors in $\mathbb{R}^d$, where each vector has $O(1)$ non-zeroes entries, and…
Due to the progressive growth of the amount of data available in a wide variety of scientific fields, it has become more difficult to ma- nipulate and analyze such information. Even though datasets have grown in size, the K-means algorithm…
We implement two novel algorithms for sparse-matrix dense-matrix multiplication (SpMM) on the GPU. Our algorithms expect the sparse input in the popular compressed-sparse-row (CSR) format and thus do not require expensive format conversion.…