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Related papers: Hierarchical self-assembly for high-yield addressa…

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Designing heterogeneous, self-assembling systems is a central challenge in soft matter and biology. We present a framework that uses gradient-based optimization to invert an analytical yield calculation, tuning systems toward target…

Soft Condensed Matter · Physics 2025-10-21 Livia A. J. Guttieres , Ryan K. Krueger , Remi Drolet , Michael P. Brenner

Molecular self-assembly on surfaces constitutes a powerful method for creating tailor-made surface structures with dedicated functionalities. Varying the intermolecular interactions allows for tuning the resulting molecular structures in a…

Mesoscale and Nanoscale Physics · Physics 2020-07-24 Christoph Schiel , Maximilian Vogtland , Ralf Bechstein , Angelika Kühnle , Philipp Maass

Hierarchical self-assembly consisting of local associations of simple building-blocks for the formation of complex structures widely exists in nature, while the essential role of local assembly remains unknown. In this work, by using…

Soft Condensed Matter · Physics 2017-10-18 Qun-li Lei , Kunn Hadinoto , Ran Ni

In this paper, we presents a novel hierarchical federated learning architecture specifically designed for smart agricultural production systems and crop yield prediction. Our approach introduces a seasonal subscription mechanism where farms…

Machine Learning · Computer Science 2025-10-15 Anas Abouaomar , Mohammed El hanjri , Abdellatif Kobbane , Anis Laouiti , Khalid Nafil

Hierarchy is one of the most conspicuous features of numerous natural, technological and social systems. The underlying structures are typically complex and their most relevant organizational principle is the ordering of the ties among the…

Physics and Society · Physics 2014-03-05 Tamás Nepusz , Tamás Vicsek

Hierarchical self-assembly arranges nanostructures at different length scales. It gradually becomes an effective method of fabricating artificial metamaterials from composite nanostructures tailored for a particular response. Hierarchical…

Self-assembly materials are traditionally designed so that molecular or meso-scale components form a single kind of large structure. Here, we propose a scheme to create "multifarious assembly mixtures", which self-assemble many different…

Disordered Systems and Neural Networks · Physics 2015-06-22 Arvind Murugan , Zorana Zeravcic , Michael P. Brenner , Stanislas Leibler

Three results are shown on producibility in the hierarchical model of tile self-assembly. It is shown that a simple greedy polynomial-time strategy decides whether an assembly A is producible. The algorithm can be optimized to use O(|A|…

Data Structures and Algorithms · Computer Science 2013-05-02 David Doty

We formulate statistical-mechanical inverse methods in order to determine optimized interparticle interactions that spontaneously produce target many-particle configurations. Motivated by advances that give experimentalists greater and…

Soft Condensed Matter · Physics 2007-05-23 Mikael C. Rechtsman , Salvatore Torquato , Frank H. Stillinger

Self-assembly is a ubiquitous process in synthetic and biological systems, broadly defined as the spontaneous organization of multiple subunits (e.g. macromolecules, particles) into ordered multi-unit structures. The vast majority of…

Soft Condensed Matter · Physics 2023-08-08 Michael F. Hagan , Gregory M. Grason

Sustainable yields that are at least 80% of the maximum sustainable yield are sometimes referred to as pretty good yield (PGY). The range of PGY harvesting strategies is generally broad and thus leaves room to account for additional…

Populations and Evolution · Quantitative Biology 2019-02-26 Niklas L. P. Lundström , Nicolas Loeuille , Xinzhu Meng , Mats Bodin , Åke Brännström

Designing components that can robustly self-assemble into structures with biological complexity is a grand challenge for material science. Proofreading and error correction is required to improve assembly yield beyond equilibrium limits,…

Soft Condensed Matter · Physics 2023-12-15 Qian-Ze Zhu , Chrisy Xiyu Du , Ella M. King , Michael P. Brenner

In this work we employ various methods of analysis (unfolding simulations and comparative analysis of structures and sequences of proteomes of thermophilic organisms) to show that organisms can follow two major strategies of thermophilic…

Biomolecules · Quantitative Biology 2007-05-23 Igor N. Berezovsky , Eugene I. Shakhnovich

Hierarchical structures are ubiquitous in human and animal societies, but a fundamental understanding of their raison d'\^etre has been lacking. Here, we present a general theory in which hierarchies are obtained as the optimal design that…

Physics and Society · Physics 2019-06-19 Sandro Claudio Lera , Didier Sornette

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

We outline a basic strategy of how self-propulsion can be used to improve the yield of a typical colloidal self-assembly process. The success of this approach is predicated on the thoughtful design of the colloidal building block as well as…

Soft Condensed Matter · Physics 2016-08-24 S. A. Mallory , A. Cacciuto

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer

Self-assembly, the process by which interacting components form well-defined and often intricate structures, is typically thought of as a spontaneous process arising from equilibrium dynamics. When a system is driven by external…

Statistical Mechanics · Physics 2021-11-12 Shriram Chennakesavalu , Grant M. Rotskoff

A hierarchical approach to the construction of compound distributions for process-induced faults in IC manufacture is proposed. Within this framework, the negative binomial distribution and the compound binomial distribution are treated as…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Yu. I. Bogdanov , N. A. Bogdanova , V. L. Dshkhunyan

We detail the application of bounding volume hierarchies to accelerate second-virial evaluations for arbitrary complex particles interacting through hard and soft finite-range potentials. This procedure, based on the construction of…

Soft Condensed Matter · Physics 2017-12-14 Maxime M. C. Tortora , Jonathan P. K. Doye