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Graph anomaly detection (GAD) is a critical task in graph machine learning, with the primary objective of identifying anomalous nodes that deviate significantly from the majority. This task is widely applied in various real-world scenarios,…

Machine Learning · Computer Science 2025-07-03 Xiang Li , Jianpeng Qi , Zhongying Zhao , Guanjie Zheng , Lei Cao , Junyu Dong , Yanwei Yu

In order to answer semantically-complicated questions about an image, a Visual Question Answering (VQA) model needs to fully understand the visual scene in the image, especially the interactive dynamics between different objects. We propose…

Computer Vision and Pattern Recognition · Computer Science 2019-10-11 Linjie Li , Zhe Gan , Yu Cheng , Jingjing Liu

Adverse Drug Reaction (ADR) is a significant public health concern world-wide. Numerous graph-based methods have been applied to biomedical graphs for predicting ADRs in pre-marketing phases. ADR detection in post-market surveillance is no…

Machine Learning · Computer Science 2020-04-02 Heeyoung Kwak , Minwoo Lee , Seunghyun Yoon , Jooyoung Chang , Sangmin Park , Kyomin Jung

Current protein language models (pLMs) predominantly focus on single-chain protein sequences and often have not accounted for constraints on generative design imposed by protein-protein interactions. To address this gap, we present paired…

Biomolecules · Quantitative Biology 2023-11-22 Simon K. S. Chu , Kathy Y. Wei

Random Walks-based Anomaly Detection (RWAD) is commonly used to identify anomalous patterns in various applications. An intriguing characteristic of RWAD is that the input graph can either be pre-existing or constructed from raw features.…

Cryptography and Security · Computer Science 2023-10-25 Yuni Lai , Marcin Waniek , Liying Li , Jingwen Wu , Yulin Zhu , Tomasz P. Michalak , Talal Rahwan , Kai Zhou

Antibody design methods condition on antigen structure to generate complementarity-determining regions (CDR), yet a systematic evaluation of baseline methods reveals that they largely ignore the antigen input. We identify three failure…

Machine Learning · Computer Science 2026-05-22 Mansoor Ahmed , Murray Patterson

Graph anomaly detection aims to identify unusual patterns in graph-based data, with wide applications in fields such as web security and financial fraud detection. Existing methods typically rely on contrastive learning, assuming that a…

Machine Learning · Computer Science 2025-05-26 Di Jin , Jingyi Cao , Xiaobao Wang , Bingdao Feng , Dongxiao He , Longbiao Wang , Jianwu Dang

Adverse drug events (ADEs) are an important aspect of drug safety. Various texts such as biomedical literature, drug reviews, and user posts on social media and medical forums contain a wealth of information about ADEs. Recent studies have…

Computation and Language · Computer Science 2024-05-21 Shaoxiong Ji , Ya Gao , Pekka Marttinen

Accurately measuring protein-RNA binding affinity is crucial in many biological processes and drug design. Previous computational methods for protein-RNA binding affinity prediction rely on either sequence or structure features, unable to…

Biomolecules · Quantitative Biology 2025-01-06 Rong Han , Xiaohong Liu , Tong Pan , Jing Xu , Xiaoyu Wang , Wuyang Lan , Zhenyu Li , Zixuan Wang , Jiangning Song , Guangyu Wang , Ting Chen

Many factors influence biomolecules binding, and its assessment constitutes an elusive challenge in computational structural biology. In this respect, the evaluation of shape complementarity at molecular interfaces is one of the main…

Machine learning methods rely on data. However, gathering suitable data can be challenging due to availability constraints, cost, or the need for domain expertise. Expanding datasets with additional sources is a common response to limited…

Machine Learning · Computer Science 2026-05-25 Xavier Cadet , Mateusz Nowak , Peter Chin

Protein-ligand complex structures have been utilised to design benchmark machine learning methods that perform important tasks related to drug design such as receptor binding site detection, small molecule docking and binding affinity…

Biomolecules · Quantitative Biology 2021-08-26 Rishal Aggarwal , Akash Gupta , U Deva Priyakumar

Given a source portrait, the automatic human body reshaping task aims at editing it to an aesthetic body shape. As the technology has been widely used in media, several methods have been proposed mainly focusing on generating optical flow…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Qiwen Deng , Yangcen Liu , Wen Li , Guoqing Wang

While the performance of face recognition systems has improved significantly in the last decade, they are proved to be highly vulnerable to presentation attacks (spoofing). Most of the research in the field of face presentation attack…

Computer Vision and Pattern Recognition · Computer Science 2019-07-10 Olegs Nikisins , Anjith George , Sebastien Marcel

We introduce HTAD, a novel model for diagnosis prediction using Electronic Health Records (EHR) represented as Heterogeneous Information Networks. Recent studies on modeling EHR have shown success in automatically learning representations…

Machine Learning · Computer Science 2019-12-24 Anahita Hosseini , Tyler Davis , Majid Sarrafzadeh

Predicting how a drug-like molecule binds to a specific protein target is a core problem in drug discovery. An extremely fast computational binding method would enable key applications such as fast virtual screening or drug engineering.…

Biomolecules · Quantitative Biology 2022-06-07 Hannes Stärk , Octavian-Eugen Ganea , Lagnajit Pattanaik , Regina Barzilay , Tommi Jaakkola

Unsupervised Domain Adaptation (UDA) is a key issue in visual recognition, as it allows to bridge different visual domains enabling robust performances in the real world. To date, all proposed approaches rely on human expertise to manually…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Luca Robbiano , Muhammad Rameez Ur Rahman , Fabio Galasso , Barbara Caputo , Fabio Maria Carlucci

Unsupervised Domain Adaptation (UDA) methods aim to transfer knowledge from a labeled source domain to an unlabeled target domain. UDA has been extensively studied in the computer vision literature. Deep networks have been shown to be…

Computer Vision and Pattern Recognition · Computer Science 2022-10-05 Shao-Yuan Lo , Vishal M. Patel

Radar is of vital importance in many fields, such as autonomous driving, safety and surveillance applications. However, it suffers from stringent constraints on its design parametrization leading to multiple trade-offs. For example, the…

Computer Vision and Pattern Recognition · Computer Science 2019-11-26 Karim Armanious , Sherif Abdulatif , Fady Aziz , Urs Schneider , Bin Yang

Learning predictive models in new domains with scarce training data is a growing challenge in modern supervised learning scenarios. This incentivizes developing domain adaptation methods that leverage the knowledge in known domains (source)…

Machine Learning · Computer Science 2023-05-02 Mohammadreza Ebrahimi , Yidong Chai , Hao Helen Zhang , Hsinchun Chen