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Medical image segmentation plays an irreplaceable role in computer-assisted diagnosis, treatment planning, and following-up. Collecting and annotating a large-scale dataset is crucial to training a powerful segmentation model, but producing…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Xiangde Luo , Minhao Hu , Wenjun Liao , Shuwei Zhai , Tao Song , Guotai Wang , Shaoting Zhang

Raman spectroscopy, as a label-free detection technology, has been widely utilized in the clinical diagnosis of pathogenic bacteria. However, Raman signals are naturally weak and sensitive to the condition of the acquisition process. The…

Image and Video Processing · Electrical Eng. & Systems 2024-12-12 Haiming Yao , Wei Luo , Xue Wang

Raman spectroscopy (RS) has been widely used for disease diagnosis, e.g., cardiovascular disease (CVD), owing to its efficiency and component-specific testing capabilities. A series of popular deep learning methods have recently been…

Image and Video Processing · Electrical Eng. & Systems 2023-04-20 Bo Yu , Hechang Chen , Chengyou Jia , Hongren Zhou , Lele Cong , Xiankai Li , Jianhui Zhuang , Xianling Cong

Surface enhanced Raman spectroscopy, is a technique of fundamental importance to analytical science and technology where the amplified Raman spectrum of analytes is used for chemical fingerprinting. Here, we showcase an engineered…

Applied Physics · Physics 2021-06-08 K N Prajapati , Anoop A Nair , S Ravi P Silva , J Mitra

Raman spectroscopy is a powerful analytical tool with applications ranging from quality control to cutting edge biomedical research. One particular area which has seen tremendous advances in the past decade is the development of powerful…

Signal Processing · Electrical Eng. & Systems 2020-06-19 M. Hamed Mozaffari , Li-Lin Tay

We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space. Differentiating species from genomic sequences (i.e., DNA…

Genomics · Quantitative Biology 2024-10-23 Zhihan Zhou , Weimin Wu , Harrison Ho , Jiayi Wang , Lizhen Shi , Ramana V Davuluri , Zhong Wang , Han Liu

This work presents a novel self-supervised representation learning method to learn efficient representations without labels on images from a 3DPM sensor (3-Dimensional Particle Measurement; estimates the particle size distribution of…

Computer Vision and Pattern Recognition · Computer Science 2022-10-20 Prakash Chandra Chhipa , Richa Upadhyay , Rajkumar Saini , Lars Lindqvist , Richard Nordenskjold , Seiichi Uchida , Marcus Liwicki

Anatomical landmark detection in medical images is essential for various clinical and research applications, including disease diagnosis and surgical planning. However, manual landmark annotation is time-consuming and requires significant…

Image and Video Processing · Electrical Eng. & Systems 2025-07-22 Soorena Salari , Arash Harirpoush , Hassan Rivaz , Yiming Xiao

Cell recognition is a fundamental task in digital histopathology image analysis. Point-based cell recognition (PCR) methods normally require a vast number of annotations, which is extremely costly, time-consuming and labor-intensive.…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Zhongyi Shui , Yizhi Zhao , Sunyi Zheng , Yunlong Zhang , Honglin Li , Shichuan Zhang , Xiaoxuan Yu , Chenglu Zhu , Lin Yang

Extracting image semantics effectively and assigning corresponding labels to multiple objects or attributes for natural images is challenging due to the complex scene contents and confusing label dependencies. Recent works have focused on…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Leilei Ma , Dengdi Sun , Lei Wang , Haifeng Zhao , Bin Luo

To improve device robustness, a highly desirable key feature of a competitive data-driven acoustic scene classification (ASC) system, a novel two-stage system based on fully convolutional neural networks (CNNs) is proposed. Our two-stage…

Pre-training a recognition model with contrastive learning on a large dataset of unlabeled data has shown great potential to boost the performance of a downstream task, e.g., image classification. However, in domains such as medical…

Computer Vision and Pattern Recognition · Computer Science 2021-08-24 Jizong Peng , Ping Wang , Chrisitian Desrosiers , Marco Pedersoli

In recent years, impressive performance of deep learning technology has been recognized in Synthetic Aperture Radar (SAR) Automatic Target Recognition (ATR). Since a large amount of annotated data is required in this technique, it poses a…

Computer Vision and Pattern Recognition · Computer Science 2024-08-08 Yikui Zhai , Wenlve Zhou , Bing Sun , Jingwen Li , Qirui Ke , Zilu Ying , Junying Gan , Chaoyun Mai , Ruggero Donida Labati , Vincenzo Piuri , Fabio Scotti

Coherent Raman scattering (CRS) spectroscopy techniques have been widely developed and optimized for different applications in biomedicine and fundamental science. The most utilized CRS technique has been coherent anti-Stokes Raman…

Optics · Physics 2020-03-05 Pavel Kolesnichenko , Jonathan O. Tollerud , Jeffrey A. Davis

Chemical imaging enabled by Raman processes is crucial to investigating biological and chemical samples in a label-free manner. Stimulated Raman spectroscopy (SRS) overcomes the key limitation associated with low signal levels in…

Optics · Physics 2026-03-25 Florian M. Schweizer , Hannah Terrasa , Manish Garg

Single-cell RNA sequencing (scRNA-seq) is essential for unraveling cellular heterogeneity and diversity, offering invaluable insights for bioinformatics advancements. Despite its potential, traditional clustering methods in scRNA-seq data…

Machine Learning · Computer Science 2025-10-01 Ping Xu , Zhiyuan Ning , Meng Xiao , Guihai Feng , Xin Li , Yuanchun Zhou , Pengfei Wang

Deep learning methods are developing rapidly in coded aperture snapshot spectral imaging (CASSI). The number of parameters and FLOPs of existing state-of-the-art methods (SOTA) continues to increase, but the reconstruction accuracy improves…

Image and Video Processing · Electrical Eng. & Systems 2023-08-04 Zeyu Cai , Chengqian Jin , Feipeng Da

Supervised deep learning algorithms have enabled significant performance gains in medical image classification tasks. But these methods rely on large labeled datasets that require resource-intensive expert annotation. Semi-supervised…

Most multi-view clustering methods are limited by shallow models without sound nonlinear information perception capability, or fail to effectively exploit complementary information hidden in different views. To tackle these issues, we…

Machine Learning · Computer Science 2022-10-14 Fu Lele , Zhang Lei , Yang Jinghua , Chen Chuan , Zhang Chuanfu , Zheng Zibin

Sequential recommender systems (SRSs) aim to predict the subsequent items which may interest users via comprehensively modeling users' complex preference embedded in the sequence of user-item interactions. However, most of existing SRSs…

Information Retrieval · Computer Science 2024-10-31 Chengkai Huang , Shoujin Wang , Xianzhi Wang , Lina Yao