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Related papers: ProtCLIP: Function-Informed Protein Multi-Modal Le…

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CLIP models perform remarkably well on zero-shot classification and retrieval tasks. But recent studies have shown that learnt representations in CLIP are not well suited for dense prediction tasks like object detection, semantic…

Computer Vision and Pattern Recognition · Computer Science 2024-05-16 Pavan Kumar Anasosalu Vasu , Hadi Pouransari , Fartash Faghri , Oncel Tuzel

Early detection of eye diseases like glaucoma, macular degeneration, and diabetic retinopathy is crucial for preventing vision loss. While artificial intelligence (AI) foundation models hold significant promise for addressing these…

Computer Vision and Pattern Recognition · Computer Science 2024-09-12 Danli Shi , Weiyi Zhang , Jiancheng Yang , Siyu Huang , Xiaolan Chen , Mayinuer Yusufu , Kai Jin , Shan Lin , Shunming Liu , Qing Zhang , Mingguang He

Protein representation learning methods have shown great potential to yield useful representation for many downstream tasks, especially on protein classification. Moreover, a few recent studies have shown great promise in addressing…

Machine Learning · Computer Science 2023-04-11 Can Chen , Jingbo Zhou , Fan Wang , Xue Liu , Dejing Dou

Severe data imbalance naturally exists among web-scale vision-language datasets. Despite this, we find CLIP pre-trained thereupon exhibits notable robustness to the data imbalance compared to supervised learning, and demonstrates…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Xin Wen , Bingchen Zhao , Yilun Chen , Jiangmiao Pang , Xiaojuan Qi

Protein is linked to almost every life process. Therefore, analyzing the biological structure and property of protein sequences is critical to the exploration of life, as well as disease detection and drug discovery. Traditional protein…

Machine Learning · Computer Science 2021-12-08 Yijia Xiao , Jiezhong Qiu , Ziang Li , Chang-Yu Hsieh , Jie Tang

Contrastive Language-Image Pre-training (CLIP), a simple yet effective pre-training paradigm, successfully introduces text supervision to vision models. It has shown promising results across various tasks due to its generalizability and…

Computer Vision and Pattern Recognition · Computer Science 2025-03-27 Zihao Zhao , Yuxiao Liu , Han Wu , Mei Wang , Yonghao Li , Sheng Wang , Lin Teng , Disheng Liu , Zhiming Cui , Qian Wang , Dinggang Shen

Cross-Modal Retrieval (CMR) is an important research topic across multimodal computing and information retrieval, which takes one type of data as the query to retrieve relevant data of another type. It has been widely used in many…

Computer Vision and Pattern Recognition · Computer Science 2022-04-19 Zhixiong Zeng , Wenji Mao

Visual language models like Contrastive Language-Image Pretraining (CLIP) have shown impressive performance in analyzing natural images with language information. However, these models often encounter challenges when applied to specialized…

Computer Vision and Pattern Recognition · Computer Science 2024-12-11 Jiaqing Zhang , Mingxiang Cao , Xue Yang , Kai Jiang , Yunsong Li

Accurately finding proteins and genes that have a certain function is the prerequisite for a broad range of biomedical applications. Despite the encouraging progress of existing computational approaches in protein function prediction, it…

Quantitative Methods · Quantitative Biology 2022-04-22 Hanwen Xu , Sheng Wang

Vision-language pretraining models have achieved great success in supporting multimedia applications by understanding the alignments between images and text. While existing vision-language pretraining models primarily focus on understanding…

Computer Vision and Pattern Recognition · Computer Science 2024-04-29 Fuxiao Liu , Hao Tan , Chris Tensmeyer

Machine learning approaches have become popular for molecular modeling tasks, including molecular force fields and properties prediction. Traditional supervised learning methods suffer from scarcity of labeled data for particular tasks,…

Chemical Physics · Physics 2022-11-29 Xiang Gao , Weihao Gao , Wenzhi Xiao , Zhirui Wang , Chong Wang , Liang Xiang

Language models (LMs) trained on vast quantities of unlabelled data have greatly advanced the field of natural language processing (NLP). In this study, we re-visit the widely accepted notion in NLP that continued pre-training LMs on…

Computation and Language · Computer Science 2023-10-09 Zhengxiang Shi , Aldo Lipani

The Visual Language Model, known for its robust cross-modal capabilities, has been extensively applied in various computer vision tasks. In this paper, we explore the use of CLIP (Contrastive Language-Image Pretraining), a vision-language…

Computer Vision and Pattern Recognition · Computer Science 2025-02-12 Huazhong Zhao , Lei Qi , Xin Geng

Although fusion of information from multiple views of mammograms plays an important role to increase accuracy of breast cancer detection, developing multi-view mammograms-based computer-aided diagnosis (CAD) schemes still faces challenges…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Xuxin Chen , Yuheng Li , Mingzhe Hu , Ella Salari , Xiaoqian Chen , Richard L. J. Qiu , Bin Zheng , Xiaofeng Yang

Vision-language models (VLMs) like CLIP (Contrastive Language-Image Pre-Training) have seen remarkable success in visual recognition, highlighting the increasing need to safeguard the intellectual property (IP) of well-trained models.…

Computer Vision and Pattern Recognition · Computer Science 2025-03-05 Lianyu Wang , Meng Wang , Huazhu Fu , Daoqiang Zhang

Molecular representation learning is crucial for the problem of molecular property prediction, where graph neural networks (GNNs) serve as an effective solution due to their structure modeling capabilities. Since labeled data is often…

Machine Learning · Computer Science 2023-09-26 Cameron Diao , Kaixiong Zhou , Zirui Liu , Xiao Huang , Xia Hu

Recently, Contrastive Language-Image Pre-training (CLIP) has shown promising performance in domain-specific data (e.g., biology), and has attracted increasing research attention. Existing works generally focus on collecting extensive…

Computer Vision and Pattern Recognition · Computer Science 2025-04-03 Junjie Wu , Jiangtao Xie , Zhaolin Zhang , Qilong Wang , Qinghua Hu , Peihua Li , Sen Xu

Recent advances in protein function prediction exploit graph-based deep learning approaches to correlate the structural and topological features of proteins with their molecular functions. However, proteins in vivo are not static but…

Biomolecules · Quantitative Biology 2022-11-22 Yuan Chiang , Wei-Han Hui , Shu-Wei Chang

CLIP (Contrastive Language-Image Pre-training) has attracted widespread attention for its multimodal generalizable knowledge, which is significant for downstream tasks. However, the computational overhead of a large number of parameters and…

Computer Vision and Pattern Recognition · Computer Science 2025-06-23 Ruiming Chen , Junming Yang , Shiyu Xia , Xu Yang , Jing Wang , Xin Geng

Less than 1% of protein sequences are structurally and functionally annotated. Natural Language Processing (NLP) community has recently embraced self-supervised learning as a powerful approach to learn representations from unlabeled text,…

Biomolecules · Quantitative Biology 2020-12-08 Modestas Filipavicius , Matteo Manica , Joris Cadow , Maria Rodriguez Martinez