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Related papers: ProtCLIP: Function-Informed Protein Multi-Modal Le…

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Protein language models (PLMs) learn probability distributions over natural protein sequences. By learning from hundreds of millions of natural protein sequences, protein understanding and design capabilities emerge. Recent works have shown…

Quantitative Methods · Quantitative Biology 2026-02-27 Timothy Fei Truong , Tristan Bepler

Contrastive Language-Image Pretraining (CLIP) stands out as a prominent method for image representation learning. Various neural architectures, spanning Transformer-based models like Vision Transformers (ViTs) to Convolutional Networks…

Computer Vision and Pattern Recognition · Computer Science 2023-12-25 Cristian Rodriguez-Opazo , Edison Marrese-Taylor , Ehsan Abbasnejad , Hamed Damirchi , Ignacio M. Jara , Felipe Bravo-Marquez , Anton van den Hengel

Modern Web systems such as social media and e-commerce contain rich contents expressed in images and text. Leveraging information from multi-modalities can improve the performance of machine learning tasks such as classification and…

Computer Vision and Pattern Recognition · Computer Science 2021-12-10 Huidong Liu , Shaoyuan Xu , Jinmiao Fu , Yang Liu , Ning Xie , Chien-Chih Wang , Bryan Wang , Yi Sun

Developing accurate and efficient coarse-grained representations of proteins is crucial for understanding their folding, function, and interactions over extended timescales. Our methodology involves simulating proteins with molecular…

Biomolecules · Quantitative Biology 2023-10-11 Carles Navarro , Maciej Majewski , Gianni de Fabritiis

This paper presents a language-powered paradigm for ordinal regression. Existing methods usually treat each rank as a category and employ a set of weights to learn these concepts. These methods are easy to overfit and usually attain…

Computer Vision and Pattern Recognition · Computer Science 2022-10-04 Wanhua Li , Xiaoke Huang , Zheng Zhu , Yansong Tang , Xiu Li , Jie Zhou , Jiwen Lu

Large-scale foundation models, such as CLIP, have demonstrated remarkable success in visual recognition tasks by embedding images in a semantically rich space. Self-supervised learning (SSL) has also shown promise in improving visual…

Computer Vision and Pattern Recognition · Computer Science 2023-08-23 Mainak Singha , Ankit Jha , Biplab Banerjee

Protein language models (pLMs) have recently gained significant attention for their ability to uncover relationships between sequence, structure, and function from evolutionary statistics, thereby accelerating therapeutic drug discovery.…

Machine Learning · Computer Science 2026-03-04 Darshan Patil , Pranshu Malviya , Mathieu Reymond , Quentin Fournier , Sarath Chandar

Open-vocabulary semantic segmentation aims to segment an image into semantic regions according to text descriptions, which may not have been seen during training. Recent two-stage methods first generate class-agnostic mask proposals and…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Feng Liang , Bichen Wu , Xiaoliang Dai , Kunpeng Li , Yinan Zhao , Hang Zhang , Peizhao Zhang , Peter Vajda , Diana Marculescu

Designing proteins with desired functions or properties represents a core goal in synthetic biology and drug discovery. Recent advances in protein language models (PLMs) have enabled the generation of highly designable protein sequences,…

Machine Learning · Computer Science 2026-05-12 Yulin Zhang , He Cao , Zihao Jiang , Chenyi Zi , Zhipeng Zhou , Zijing Liu , Yu Li , Jia Li , Ziqi Gao

Prompt learning has emerged as an efficient alternative for fine-tuning foundational models, such as CLIP, for various downstream tasks. However, there is no work that provides a comprehensive explanation for the working mechanism of the…

Computer Vision and Pattern Recognition · Computer Science 2024-03-13 Shuailei Ma , Chen-Wei Xie , Ying Wei , Siyang Sun , Jiaqi Fan , Xiaoyi Bao , Yuxin Guo , Yun Zheng

The goal of protein representation learning is to extract knowledge from protein databases that can be applied to various protein-related downstream tasks. Although protein sequence, structure, and function are the three key modalities for…

Biomolecules · Quantitative Biology 2024-05-14 Eunji Ko , Seul Lee , Minseon Kim , Dongki Kim

We propose Domain-Conditioned Meta-Contrastive Learning, a framework for improving the cross-domain generalization of vision-language models. While contrastive models such as CLIP achieve strong performance through large-scale training,…

Optimization and Control · Mathematics 2026-03-31 Merham Fouladvand , Peuroly Batra

Prompt learning has become a dominant paradigm for adapting vision-language models (VLMs) such as CLIP to downstream tasks without modifying pretrained weights. While extending prompts to both vision and text encoders across multiple…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Sajjad Ghiasvand , Haniyeh Ehsani Oskouie , Mahnoosh Alizadeh , Ramtin Pedarsani

Protein analysis tasks arising in healthcare settings often require accurate reasoning under protein sequence constraints, involving tasks such as functional interpretation of disease-related variants, protein-level analysis for clinical…

Artificial Intelligence · Computer Science 2026-03-03 Congying Liu , Taihao Li , Ming Huang , Xingyuan Wei , Peipei Liu , Yiqing Shen , Yanxu Mao , Tiehan Cui

In recent years, patch representation learning has emerged as a necessary research direction for exploiting the capabilities of machine learning in software generation. These representations have driven significant performance enhancements…

Software Engineering · Computer Science 2024-04-02 Xunzhu Tang , Zhenghan Chen , Saad Ezzini , Haoye Tian , Jacques Klein , Tegawende F. Bissyande

We present SignCLIP, which re-purposes CLIP (Contrastive Language-Image Pretraining) to project spoken language text and sign language videos, two classes of natural languages of distinct modalities, into the same space. SignCLIP is an…

Computation and Language · Computer Science 2024-10-08 Zifan Jiang , Gerard Sant , Amit Moryossef , Mathias Müller , Rico Sennrich , Sarah Ebling

Prompt learning is an effective method to customize Vision-Language Models (VLMs) for various downstream tasks, involving tuning very few parameters of input prompt tokens. Recently, prompt pretraining in large-scale dataset (e.g.,…

Computer Vision and Pattern Recognition · Computer Science 2024-09-11 Zhenyuan Chen , Lingfeng Yang , Shuo Chen , Zhaowei Chen , Jiajun Liang , Xiang Li

Large-scale multi-modal contrastive pre-training has demonstrated great utility to learn transferable features for a range of downstream tasks by mapping multiple modalities into a shared embedding space. Typically, this has employed…

Computer Vision and Pattern Recognition · Computer Science 2022-07-27 Haoxuan You , Luowei Zhou , Bin Xiao , Noel Codella , Yu Cheng , Ruochen Xu , Shih-Fu Chang , Lu Yuan

CLIP has become a cornerstone of multimodal representation learning, yet improving its performance typically requires a prohibitively costly process of training from scratch on billions of samples. We ask a different question: Can we…

Computer Vision and Pattern Recognition · Computer Science 2026-01-16 Anant Mehta , Xiyuan Wei , Xingyu Chen , Tianbao Yang

Pre-trained vision-language models are able to interpret visual concepts and language semantics. Prompt learning, a method of constructing prompts for text encoders or image encoders, elicits the potentials of pre-trained models and readily…

Computer Vision and Pattern Recognition · Computer Science 2025-02-21 Zhenhan Huang , Tejaswini Pedapati , Pin-Yu Chen , Jianxi Gao