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Objective: Human-curated disease ontologies are widely used for diagnostic evaluation, treatment and data comparisons over time, and clinical decision support. The classification principles underlying these ontologies are guided by the…

Molecular Networks · Quantitative Biology 2021-04-02 Giorgio Grani , Lorenzo Madeddu , Paola Velardi

The use of networks to integrate different genetic, proteomic, and metabolic datasets has been proposed as a viable path toward elucidating the origins of specific diseases. Here we introduce a new phenotypic database summarizing…

Biological Physics · Physics 2015-05-14 Cesar A. Hidalgo , Nicholas Blumm , Albert-Laszlo Barabasi , Nicholas Christakis

Sampling is an established technique to scale graph neural networks to large graphs. Current approaches however assume the graphs to be homogeneous in terms of relations and ignore relation types, critically important in biomedical graphs.…

Machine Learning · Computer Science 2021-05-31 Arthur Feeney , Rishabh Gupta , Veronika Thost , Rico Angell , Gayathri Chandu , Yash Adhikari , Tengfei Ma

Background Network analyses on psychopathological data focus on the network structure and its derivatives such as node centrality. One conclusion one can draw from centrality measures is that the node with the highest centrality is likely…

Neurons and Cognition · Quantitative Biology 2017-06-21 Jonas M B Haslbeck , Eiko I Fried

Large Language Models (LLMs) have been increasingly studied as neural knowledge bases for supporting knowledge-intensive applications such as question answering and fact checking. However, the structural organization of their knowledge…

Machine Learning · Computer Science 2026-01-16 Utkarsh Sahu , Zhisheng Qi , Mahantesh Halappanavar , Nedim Lipka , Ryan A. Rossi , Franck Dernoncourt , Yu Zhang , Yao Ma , Yu Wang

Psychological network approaches propose to see symptoms or questionnaire items as interconnected nodes, with links between them reflecting pairwise statistical dependencies evaluated cross-sectional, time-series, or panel data. These…

Psychiatric disorders have been traditionally conceptualized as latent conditions producing observable symptoms, but recent studies suggest that psychopathology may emerge from symptoms interactions. Psychometric networking model these…

Social and Information Networks · Computer Science 2026-04-27 Francesca Possenti , Laura Girelli , Paolo Tieri , Manuela Petti

Patients with diabetes are at increased risk of comorbid depression or anxiety, complicating their management. This study evaluated the performance of large language models (LLMs) in detecting these symptoms from secure patient messages. We…

The paper utilizes the graph embeddings generated for entities of a large biomedical database to perform link prediction to capture various new relationships among different entities. A novel node similarity measure is proposed that…

Information Retrieval · Computer Science 2021-11-01 Prakhar Gurawa , Matthias Nickles

Graph theory has drawn a lot of attention in the field of Neuroscience during the last decade, mainly due to the abundance of tools that it provides to explore the interactions of elements in a complex network like the brain. The local and…

Neurons and Cognition · Quantitative Biology 2016-11-16 Sofia Ira Ktena , Sarah Parisot , Jonathan Passerat-Palmbach , Daniel Rueckert

Nonlinear relations, such as the curvilinear relationship between childhood trauma and resilience in patients with schizophrenia and the moderation relationship between mentalizing, and internalizing and externalizing symptoms and quality…

Methodology · Statistics 2025-09-16 Lindley R. Slipetz , Jiaxing Qiu , Siqi Sun , Teague R. Henry

Since the introduction of network psychometrics, several connections to statistical models in "classical" psychometrics (i.e., IRT, SEM, GLM) as well as to approaches from other research fields have been established. In this paper, these…

Methodology · Statistics 2026-05-18 Kevin Kistermann , Vivato V. Andriamiarana , Augustin Kelava

Mental health is a critical issue in modern society, and mental disorders could sometimes turn to suicidal ideation without effective treatment. Early detection of mental disorders and suicidal ideation from social content provides a…

Computation and Language · Computer Science 2021-09-27 Shaoxiong Ji , Xue Li , Zi Huang , Erik Cambria

FDA drug labels are rich sources of information about drugs and drug-disease relations, but their complexity makes them challenging texts to analyze in isolation. To overcome this, we situate these labels in two health knowledge graphs: one…

Computation and Language · Computer Science 2019-04-02 Bruno Godefroy , Christopher Potts

The generative capabilities of LLM models offer opportunities for accelerating tasks but raise concerns about the authenticity of the knowledge they produce. To address these concerns, we present a computational approach that evaluates the…

Artificial Intelligence · Computer Science 2025-03-25 Ahmed Abdeen Hamed , Alessandro Crimi , Magdalena M. Misiak , Byung Suk Lee

Large language models (LLMs) are increasingly used in the mental health domain, yet it remains unclear how well they capture related biomedical knowledge and how reliably they apply it to clinically salient structured judgments. Here, we…

Computation and Language · Computer Science 2026-05-18 Weixin Liu , Congning Ni , Shelagh A. Mulvaney , Susannah L. Rose , Murat Kantarcioglu , Bradley A. Malin , Zhijun Yin

Prompt learning has demonstrated impressive efficacy in the fine-tuning of multimodal large models to a wide range of downstream tasks. Nonetheless, applying existing prompt learning methods for the diagnosis of neurological disorder still…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Liang Peng , Songyue Cai , Zongqian Wu , Huifang Shang , Xiaofeng Zhu , Xiaoxiao Li

Understanding the interactions between biomarkers among brain regions during neurodegenerative disease is essential for unravelling the mechanisms underlying disease progression. For example, pathophysiological models of Alzheimer's Disease…

Artificial Intelligence · Computer Science 2025-11-17 Tiantian He , An Zhao , Elinor Thompson , Anna Schroder , Ahmed Abdulaal , Frederik Barkhof , Daniel C. Alexander

Early diagnosis of mental disorders and intervention can facilitate the prevention of severe injuries and the improvement of treatment results. Using social media and pre-trained language models, this study explores how user-generated data…

Information Retrieval · Computer Science 2024-03-01 Alireza Pourkeyvan , Ramin Safa , Ali Sorourkhah

Leveraging the synergy between causal knowledge graphs and a large language model (LLM), our study introduces a groundbreaking approach for computational hypothesis generation in psychology. We analyzed 43,312 psychology articles using a…

Artificial Intelligence · Computer Science 2024-08-19 Song Tong , Kai Mao , Zhen Huang , Yukun Zhao , Kaiping Peng
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