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Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
We present a new fast all-pairs shortest path algorithm for unweighted graphs. In breadth-first search which is said to representative and fast in unweighted graphs, the average number of accesses to adjacent vertices (expressed by…
We present an approach to match partially occluded plant leaves with databases of full plant leaves. Although contour based 2D shape matching has been studied extensively in the last couple of decades, matching occluded leaves with full…
Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…
We give a new type of Schur-Weyl duality for the representations of a family of quantum subgroups and their centralizer algebra. We define and classify singly-generated, Yang-Baxter relation planar algebras. We present the skein theoretic…
We propose polynomial-time algorithms that sparsify planar and bounded-genus graphs while preserving optimal or near-optimal solutions to Steiner problems. Our main contribution is a polynomial-time algorithm that, given an unweighted graph…
Bipartite Correlation clustering is the problem of generating a set of disjoint bi-cliques on a set of nodes while minimizing the symmetric difference to a bipartite input graph. The number or size of the output clusters is not constrained…
Albertson and Berman conjectured that every planar graph has an induced forest on half of its vertices. The best known lower bound, due to Borodin, is that every planar graph has an induced forest on two fifths of its vertices. In a related…
In 1979, Nishizeki and Baybars showed that every planar graph with minimum degree 3 has a matching of size $\frac{n}{3}+c$ (where the constant $c$ depends on the connectivity), and even better bounds hold for planar graphs with minimum…
Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the…
Graph similarity learning, crucial for tasks such as graph classification and similarity search, focuses on measuring the similarity between two graph-structured entities. The core challenge in this field is effectively managing the…
We show that the edges of any planar graph of maximum degree at most $9$ can be partitioned into $4$ linear forests and a matching. Combined with known results, this implies that the edges of any planar graph $G$ of odd maximum degree…
We initiate the study of non-semisimple algebras in fusion categories by establishing the framework of $\mathcal{C}$-species -- analogous to the framework of species and quivers used in the study of Artin algebras. Under the (necessary)…
We consider Directed Steiner Forest (DSF), a fundamental problem in network design. The input to DSF is a directed edge-weighted graph $G = (V, E)$ and a collection of vertex pairs $\{(s_i, t_i)\}_{i \in [k]}$. The goal is to find a minimum…
We study evolution algebras of arbitrary dimension. We analyze in deep the notions of evolution subalgebras, ideals and non-degeneracy and describe the ideals generated by one element and characterize the simple evolution algebras. We also…
In this paper, we show that every planar graph without $4$-cycles and $6$-cycles has a partition of its vertex set into two sets, where one set induces a forest, and the other induces a forest with maximum degree at most $2$ (equivalently,…
Partitioning a graph into balanced components is important for several applications. For multi-objective problems, it is useful not only to find one solution but also to enumerate all the solutions with good values of objectives. However,…
We present a graph-based variational algorithm for classification of high-dimensional data, generalizing the binary diffuse interface model to the case of multiple classes. Motivated by total variation techniques, the method involves…
This paper explores the use of factor graphs as an inference and analysis tool for Bayesian peer-to-peer decentralized data fusion. We propose a framework by which agents can each use local factor graphs to represent relevant partitions of…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…